Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   AB1F57_RS01700 Genome accession   NZ_CP162268
Coordinates   303967..306417 (+) Length   816 a.a.
NCBI ID   WP_170238777.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 298967..311417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS01665 (AB1F57_01665) - 299129..300019 (+) 891 WP_367985982.1 aminoglycoside phosphotransferase family protein -
  AB1F57_RS01670 (AB1F57_01670) purR 300111..300923 (+) 813 WP_105136988.1 pur operon repressor -
  AB1F57_RS01675 (AB1F57_01675) - 301057..301473 (+) 417 WP_367985983.1 hypothetical protein -
  AB1F57_RS01680 (AB1F57_01680) - 301491..302042 (+) 552 WP_367985984.1 hypothetical protein -
  AB1F57_RS01685 (AB1F57_01685) - 302187..302735 (+) 549 WP_367985985.1 hypothetical protein -
  AB1F57_RS01690 (AB1F57_01690) - 302732..303034 (+) 303 WP_318829996.1 DUF4176 domain-containing protein -
  AB1F57_RS01695 (AB1F57_01695) - 303504..303962 (+) 459 WP_105111716.1 CtsR family transcriptional regulator -
  AB1F57_RS01700 (AB1F57_01700) clpC 303967..306417 (+) 2451 WP_170238777.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AB1F57_RS01705 (AB1F57_01705) - 306478..307515 (+) 1038 WP_170238778.1 AAA family ATPase -
  AB1F57_RS01710 (AB1F57_01710) pnuC 307531..308334 (+) 804 WP_105138347.1 nicotinamide riboside transporter PnuC -
  AB1F57_RS01715 (AB1F57_01715) ltrA 308909..310186 (+) 1278 WP_367985804.1 group II intron reverse transcriptase/maturase -
  AB1F57_RS01720 (AB1F57_01720) - 310603..311076 (-) 474 WP_170239020.1 C39 family peptidase -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 89899.48 Da        Isoelectric Point: 6.6638

>NTDB_id=1024685 AB1F57_RS01700 WP_170238777.1 303967..306417(+) (clpC) [Streptococcus sp. ZY1909104]
MNISKGLKRVFEDAQLIAQRYSSDLLETWHVLLAFVINQDTVAGAVLADYPPSVADYEHATFVVTEKVYQEDIEFFKILP
SSKRLDEKAANAKTIAQAVKAKEVGTEHLFLAMLLDKKTVASQILDKVGFHHEDSDDKIRLLDLRKNLEARAGFNKEDIK
AIRLALKGRKASQQTMGQMMGGGMPQPQTGGLEDYTRDLTALAREGKMDPVIGRDTEISRMVQILSRKTKNNPVLVGDAG
VGKTALALGLAQRVASGDVPPTLAKMRVLELDLMSVVSGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGI
DSTMDAANILKPALARGTLRTLGATTQSEYQKHIEKDAALVRRFAKVIIEEPTMADSIAILAGLKGTFEKYHRVQITDSA
VETAVTYAKRYLTSKRLPDSAIDLLDESAARVQNRVKGQPVATGLTVLDQALMAGKYKTVSKLLLAEKEAVKAGQGYDLE
VTEADILETLSRLSGIPVQKLSQTDAKKYLNLEAELHKRVIGQDQAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVG
KTELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNIL
LQVLDDGVLTDNKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGALDLSKSQEHVEKRIFEELKKAYRPEFINRIDEKVV
FHSLSEADMQDIVKVMVQPLIAITAERGLTLKLQPSALKLLATEGYDPEMGARPLRRLLQTKLEDSLAEMLLRGDLVGGQ
TLKVGVKAGQLKFDIV

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=1024685 AB1F57_RS01700 WP_170238777.1 303967..306417(+) (clpC) [Streptococcus sp. ZY1909104]
ATGAATATTTCAAAGGGATTGAAACGGGTCTTTGAGGATGCCCAGCTGATTGCTCAACGTTATAGTAGTGACTTGTTGGA
GACCTGGCATGTGCTCTTGGCCTTTGTTATCAACCAAGATACGGTAGCTGGAGCGGTCCTGGCAGATTATCCACCTAGTG
TGGCAGACTATGAGCATGCTACCTTTGTCGTGACCGAAAAAGTCTATCAGGAGGACATAGAGTTCTTCAAGATTTTGCCG
TCGTCCAAGCGTTTGGATGAGAAGGCAGCCAATGCCAAAACCATTGCGCAGGCCGTCAAGGCCAAGGAAGTAGGAACAGA
GCATCTTTTCCTAGCCATGCTTTTGGACAAGAAAACAGTGGCCAGCCAGATTTTGGACAAGGTTGGTTTTCACCATGAAG
ACTCGGATGATAAGATTCGCCTGCTAGATTTGCGGAAAAATCTTGAGGCCCGTGCAGGCTTCAACAAGGAAGATATTAAG
GCCATTCGTCTGGCCTTGAAGGGGCGCAAGGCTTCTCAACAGACCATGGGGCAGATGATGGGTGGCGGTATGCCTCAGCC
CCAGACAGGTGGTTTGGAAGATTACACCCGTGACTTGACTGCCTTGGCTCGTGAAGGCAAGATGGATCCTGTTATCGGTC
GTGATACTGAGATTTCGCGTATGGTGCAGATTTTATCGCGCAAGACCAAGAATAATCCTGTCTTGGTCGGTGATGCGGGT
GTCGGGAAAACAGCCCTGGCTCTGGGACTTGCTCAGCGTGTAGCGTCGGGAGATGTTCCTCCTACCCTGGCCAAGATGCG
GGTCTTGGAGCTGGATTTGATGAGTGTGGTTTCTGGGACCCGTTTCCGTGGGGATTTTGAGGAGCGGATGAACAATATCA
TCAACGACATCGAAGAAGATGGTCAGGTGATTCTTTTCATCGATGAGCTTCATACCATTATGGGCTCTGGTTCTGGGATT
GATTCGACCATGGATGCGGCCAATATCCTCAAGCCTGCTCTGGCACGTGGCACTCTGCGGACGCTTGGTGCGACGACCCA
GTCGGAATATCAGAAACATATCGAGAAGGATGCTGCTCTGGTTCGCCGTTTTGCCAAGGTCATCATCGAAGAGCCAACAA
TGGCGGACAGCATTGCCATTTTGGCAGGTCTCAAAGGGACTTTTGAAAAATACCACAGGGTCCAAATCACAGATAGTGCT
GTAGAGACAGCCGTGACCTATGCCAAGCGGTATTTGACCAGCAAACGCCTGCCGGATTCAGCAATTGACTTACTAGACGA
ATCAGCGGCAAGGGTGCAGAACCGTGTCAAGGGTCAGCCAGTTGCGACAGGCTTGACAGTCCTTGACCAGGCCCTCATGG
CTGGCAAATACAAAACGGTCAGCAAGCTCCTCCTGGCTGAGAAAGAGGCTGTTAAAGCCGGCCAAGGTTACGACTTAGAA
GTGACGGAGGCAGATATTTTGGAGACCCTCAGTCGCCTGTCGGGTATCCCAGTGCAGAAACTCAGCCAGACAGATGCCAA
GAAATACCTGAACCTGGAAGCAGAACTCCACAAGCGGGTCATCGGTCAGGACCAGGCCATCTCAGCCGTCAGCAGAGCCA
TTCGACGCAATCAGTCTGGCATTCGGACCGGTCGCCGTCCAATCGGTTCCTTTATGTTCCTGGGGCCAACAGGTGTCGGC
AAGACCGAGCTGGCTAAGGCCCTGGCAGAAGTCCTCTTTGATGATGAGTCGGCACTAATCCGCTTTGATATGTCCGAGTA
TATGGAGAAATTTGCGGCCAGCCGCCTCAACGGTGCGCCTCCAGGCTATGTTGGCTATGAAGAGGGTGGCGAGTTGACGG
AAAAAGTCCGCAACAAGCCTTACTCTGTCCTTCTCTTTGACGAGGTTGAAAAGGCCCACCCAGATATTTTCAATATCCTC
CTCCAGGTCTTGGACGATGGTGTCTTGACAGACAACAAGGGGCGTAAGGTAGATTTCTCTAATACGATTATTATCATGAC
CTCCAACCTTGGGGCAACTGCCCTGAGGGACGATAAGACGGTTGGTTTTGGTGCCCTTGATTTGTCCAAGAGCCAGGAGC
ATGTGGAAAAACGGATTTTCGAGGAATTGAAAAAGGCCTACCGCCCAGAGTTTATCAACCGTATTGATGAAAAGGTTGTC
TTCCACAGCCTATCTGAAGCGGATATGCAGGATATTGTCAAGGTCATGGTGCAGCCGCTGATAGCCATCACGGCCGAGCG
TGGTCTGACCCTCAAGTTGCAACCGTCTGCTCTCAAACTCCTAGCGACAGAAGGCTACGATCCAGAAATGGGTGCCCGTC
CGCTCCGCCGTCTCTTGCAGACCAAGCTGGAAGATTCATTGGCAGAAATGCTCTTGCGTGGTGACCTGGTTGGCGGTCAA
ACCCTTAAAGTGGGCGTCAAAGCTGGCCAATTGAAATTTGACATAGTGTAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(374-441)

AAA domain (Cdc48 subfamily) (AAA_2)

(546-717)

ATPase family associated with various cellular activities (AAA) (AAA)

(234-368)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(92-130)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(14-49)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(724-804)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus pneumoniae TIGR4

71.936

100

0.719
  clpC Streptococcus pneumoniae Rx1

71.936

100

0.719
  clpC Streptococcus pneumoniae D39

71.936

100

0.719
  clpC Streptococcus mutans UA159

67.159

99.632

0.669
  clpC Streptococcus thermophilus LMD-9

64.242

100

0.65
  clpC Streptococcus thermophilus LMG 18311

64

100

0.647
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.551

100

0.493
  clpC Bacillus subtilis subsp. subtilis str. 168

43.78

100

0.449
  clpC Lactococcus lactis subsp. cremoris KW2

45.191

80.27

0.363

Multiple sequence alignment