Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQN42_RS00210 Genome accession   NZ_LS483436
Coordinates   31204..31977 (+) Length   257 a.a.
NCBI ID   WP_003077503.1    Uniprot ID   -
Organism   Streptococcus intermedius strain NCTC11324     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26204..36977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN42_RS00190 (NCTC11324_00038) mreD 26982..27482 (+) 501 WP_003077700.1 rod shape-determining protein MreD -
  DQN42_RS00195 (NCTC11324_00039) pcsB 27592..28773 (+) 1182 WP_003077627.1 peptidoglycan hydrolase PcsB -
  DQN42_RS00200 (NCTC11324_00040) - 28907..29875 (+) 969 WP_003075138.1 ribose-phosphate diphosphokinase -
  DQN42_RS00205 (NCTC11324_00041) - 30039..31226 (+) 1188 WP_003077597.1 pyridoxal phosphate-dependent aminotransferase -
  DQN42_RS00210 (NCTC11324_00042) recO 31204..31977 (+) 774 WP_003077503.1 DNA repair protein RecO Machinery gene
  DQN42_RS00215 (NCTC11324_00043) plsX 31974..32972 (+) 999 WP_003077605.1 phosphate acyltransferase PlsX -
  DQN42_RS00220 (NCTC11324_00044) - 32969..33214 (+) 246 WP_003075134.1 acyl carrier protein -
  DQN42_RS00225 (NCTC11324_00045) purC 33359..34066 (+) 708 WP_003077739.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30151.67 Da        Isoelectric Point: 5.8562

>NTDB_id=1024663 DQN42_RS00210 WP_003077503.1 31204..31977(+) (recO) [Streptococcus intermedius strain NCTC11324]
MLKSITSKGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVRNSKLSPVIQPLVVANFLMKVNDDGLSYIDDYQEIRTFQ
HINHDLFTMAYATYVVALADASIQDNELDSALFVFLQKTLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRIG
LPFDFSFTYNGVLCPEHYSKDERRSHLEPNILYLLDQFQAVQFSDLKTISLNSELKYQLRKVIDQIYEEYVGIHLKSKKF
IDSLEDWGEILKNKELK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1024663 DQN42_RS00210 WP_003077503.1 31204..31977(+) (recO) [Streptococcus intermedius strain NCTC11324]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAACCGTAATTTTCGTGAAGATGATAAGCTAGTTAAAATTTT
CACAGAACAAGCTGGCAAGAGGATGTTTTTCGTGAAACACGTTAGAAATTCTAAGTTAAGTCCAGTTATTCAACCTCTGG
TAGTCGCTAATTTTTTGATGAAGGTAAATGATGACGGTTTGAGCTATATTGATGATTATCAAGAAATTAGAACTTTTCAG
CATATCAATCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTGGCGGATGCCAGTATTCAGGATAATGA
ACTAGATTCTGCTCTCTTTGTTTTTTTGCAAAAAACATTAGAATTGATGGAGCAAGGTTTGGATTACGAAGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGCGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCACCGAATAGGG
CTACCGTTTGATTTTTCTTTTACCTATAATGGCGTTTTATGTCCAGAACATTATAGCAAAGATGAGCGACGGAGTCATTT
GGAACCCAATATTCTTTATTTATTAGACCAATTTCAAGCAGTTCAATTTAGTGACCTGAAAACAATTTCGTTAAATTCTG
AATTAAAATATCAATTGCGAAAAGTAATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAATCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAGAAATCTTAAAGAACAAGGAGTTGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

73.333

99.222

0.728