Detailed information NTG0102463

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ECRM12581_RS24105
• Genome accession: NZ_CP007136
• Coordinates: 4703700..4704692 (+)
• Length: 330 a.a.
• NCBI ID: WP_072145504.1
• Uniprot ID: -
• Organism: Escherichia coli O145:H28 str. RM12581
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4698700..4709692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECRM12581_RS24080 (ECRM12581_23755)	rbsD	4698824..4699243 (+)	420	WP_000715936.1	D-ribose pyranase	-
ECRM12581_RS24085 (ECRM12581_23760)	rbsA	4699251..4700756 (+)	1506	WP_000387770.1	ribose ABC transporter ATP-binding protein RbsA	-
ECRM12581_RS24090 (ECRM12581_23765)	rbsC	4700761..4701726 (+)	966	WP_000211858.1	ribose ABC transporter permease	-
ECRM12581_RS24095 (ECRM12581_23770)	rbsB	4701751..4702641 (+)	891	WP_001056273.1	ribose ABC transporter substrate-binding protein RbsB	-
ECRM12581_RS24100 (ECRM12581_23775)	rbsK	4702767..4703696 (+)	930	WP_024221644.1	ribokinase	-
ECRM12581_RS24105 (ECRM12581_23780)	cytR	4703700..4704692 (+)	993	WP_072145504.1	ribose operon transcriptional repressor RbsR	Regulator
ECRM12581_RS24110 (ECRM12581_23785)	mdtD	4704670..4706085 (-)	1416	WP_001280851.1	multidrug transporter subunit MdtD	-
ECRM12581_RS24115 (ECRM12581_23790)	yieP	4706108..4706800 (-)	693	WP_001131164.1	FadR/GntR family transcriptional regulator	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 36596.93 Da
• Isoelectric Point: 5.2141

>NTDB_id=102463 ECRM12581_RS24105 WP_072145504.1 4703700..4704692(+) (cytR) [Escherichia coli O145:H28 str. RM12581]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPL
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide

• Length: 993 bp

>NTDB_id=102463 ECRM12581_RS24105 WP_072145504.1 4703700..4704692(+) (cytR) [Escherichia coli O145:H28 str. RM12581]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACTGGTGCGCGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAGCGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCTG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTTATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.048	100	0.373
cytR	Vibrio cholerae C6706	39.088	93.03	0.364