Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB3N44_RS15690 Genome accession   NZ_CP162195
Coordinates   3291782..3293215 (-) Length   477 a.a.
NCBI ID   WP_080328330.1    Uniprot ID   A0AA96M508
Organism   Enterobacter chuandaensis strain STK53-E     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3286782..3298215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N44_RS15660 (AB3N44_15650) elbB 3288315..3288968 (+) 654 WP_333017112.1 isoprenoid biosynthesis glyoxalase ElbB -
  AB3N44_RS15665 (AB3N44_15655) mtgA 3288965..3289690 (+) 726 WP_333016901.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  AB3N44_RS15670 (AB3N44_15660) npr 3289729..3290001 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  AB3N44_RS15675 (AB3N44_15665) rapZ 3289998..3290852 (-) 855 WP_008501442.1 RNase adapter RapZ -
  AB3N44_RS15680 (AB3N44_15670) ptsN 3290898..3291389 (-) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AB3N44_RS15685 (AB3N44_15675) hpf 3291472..3291759 (-) 288 WP_014171818.1 ribosome hibernation promoting factor -
  AB3N44_RS15690 (AB3N44_15680) rpoN/rpoN1 3291782..3293215 (-) 1434 WP_080328330.1 RNA polymerase factor sigma-54 Machinery gene
  AB3N44_RS15695 (AB3N44_15685) lptB 3293263..3293988 (-) 726 WP_080328329.1 LPS export ABC transporter ATP-binding protein -
  AB3N44_RS15700 (AB3N44_15690) lptA 3293995..3294549 (-) 555 WP_119916485.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  AB3N44_RS15705 (AB3N44_15695) lptC 3294518..3295093 (-) 576 WP_333016902.1 LPS export ABC transporter periplasmic protein LptC -
  AB3N44_RS15710 (AB3N44_15700) kdsC 3295090..3295656 (-) 567 WP_080328326.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AB3N44_RS15715 (AB3N44_15705) kdsD 3295671..3296657 (-) 987 WP_028014567.1 arabinose-5-phosphate isomerase KdsD -
  AB3N44_RS15720 (AB3N44_15710) - 3296671..3297648 (-) 978 WP_080328325.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54224.03 Da        Isoelectric Point: 4.3198

>NTDB_id=1024613 AB3N44_RS15690 WP_080328330.1 3291782..3293215(-) (rpoN/rpoN1) [Enterobacter chuandaensis strain STK53-E]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLEEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWIVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1024613 AB3N44_RS15690 WP_080328330.1 3291782..3293215(-) (rpoN/rpoN1) [Enterobacter chuandaensis strain STK53-E]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCCATTCGTCTGCTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCCCTGCTGGAGCAAGCCGATCTTCATG
ATGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCAGATGCTCTCGAACAAAAAGAGATGCCGGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTATACCGCTGGCACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGCTACCGGTCTATCAGGGCGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTAGAGCTTACCCCCTTCT
CCGATACCGACCGCGCGATCGCCACGTCGATTGTCGACGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAC
ATTCTGGAAAGCATGGGCGACGAAGAGATTGAGCTTGAAGAGATTGAAGCCGTTCTTAAGCGTATACAGCGTTTTGATCC
AGTCGGCGTGGCCGCGAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTTG
AGGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTTCTCGCCAACCACGATTTCCGCTCTCTGATGCGCGTTACGCGT
TTGAAAGAAGAGGTGCTGAAAGAGGCAGTGAATCTGATCCAGTCACTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAGTACGTGATCCCGGACGTGCTGGTCAGAAAACACAATGACCGCTGGATCGTTGAACTGAACTCTGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGCAACGATTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGTTGATCAAGAGTCTGGAGAGCCGAAATGATACCCTGCTCCGCGTGAGCCGCTGCAT
CGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCCACGATTTCCCGCGTCACGACGCAGAAGTATCTGCACAGTCCGCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAATACCGAGGGTGGCGGCGAAGCCTCCTCAACGGCGATTCGTGCCCTGGTGAAGAAGTT
AATCGCCGCGGAGAACCCCGCGAAGCCACTAAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482

Multiple sequence alignment