Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQN79_RS00160 Genome accession   NZ_LS483435
Coordinates   32628..33233 (-) Length   201 a.a.
NCBI ID   WP_003774251.1    Uniprot ID   D4DTN8
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27628..38233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS00155 (NCTC11050_00031) hemB 31552..32553 (+) 1002 WP_003774255.1 porphobilinogen synthase -
  DQN79_RS00160 (NCTC11050_00032) recR 32628..33233 (-) 606 WP_003774251.1 recombination mediator RecR Machinery gene
  DQN79_RS00165 (NCTC11050_00033) glyA 33347..34597 (-) 1251 WP_003774247.1 serine hydroxymethyltransferase -
  DQN79_RS00170 (NCTC11050_00034) mglC 34822..35832 (-) 1011 WP_041961498.1 galactose/methyl galactoside ABC transporter permease MglC -
  DQN79_RS00175 (NCTC11050_00035) mglA 35898..37421 (-) 1524 WP_041961499.1 galactose/methyl galactoside ABC transporter ATP-binding protein MglA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22408.90 Da        Isoelectric Point: 5.5499

>NTDB_id=1024601 DQN79_RS00160 WP_003774251.1 32628..33233(-) (recR) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MSKPQDAFSRLIHALKILPNVGPKSAQRMAYQLLQYNREGAEELVEALQHALKQVRHCTLCNTLCENELCEICANPERDG
KRLMIVHMPADVAGMEAAHCHDGLYFVLMGHISPLQDMDLGHIALEQLVGRLQNSEIEEIIIATNFTAEGDATAYILAEL
LKNLPYKVSRLARGMPLGAELEYIDAGTLAQAVYDRKQLKE

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1024601 DQN79_RS00160 WP_003774251.1 32628..33233(-) (recR) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGTCCAAACCGCAAGATGCATTTTCCAGATTGATACATGCGCTGAAAATCCTGCCCAATGTCGGCCCGAAATCGGCCCA
GCGTATGGCCTACCAACTTCTCCAATACAACCGTGAAGGCGCGGAAGAACTTGTCGAGGCTTTGCAGCATGCACTGAAGC
AAGTGCGACATTGCACGCTTTGCAATACTTTATGCGAGAATGAATTATGCGAAATCTGCGCCAATCCGGAGCGGGACGGC
AAACGGTTGATGATAGTTCATATGCCCGCCGATGTTGCCGGAATGGAAGCGGCGCATTGTCATGACGGCTTATATTTTGT
CCTGATGGGGCATATCAGCCCGCTGCAAGATATGGACTTGGGCCATATTGCGTTGGAACAATTAGTTGGAAGGCTGCAAA
ACAGCGAAATCGAGGAAATCATTATCGCCACAAATTTCACCGCCGAAGGCGATGCTACTGCCTACATTTTGGCCGAACTG
CTGAAAAACCTGCCTTACAAAGTCAGTCGTTTGGCACGCGGTATGCCGCTGGGGGCGGAACTGGAATATATCGATGCGGG
AACATTGGCTCAAGCAGTATATGACCGTAAGCAGTTAAAAGAGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DTN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.743

95.025

0.368
  recR Streptococcus pneumoniae R6

38.021

95.522

0.363