Detailed information NTG1024595

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3N41_RS21195
• Genome accession: NZ_CP162191
• Coordinates: 4313097..4313897 (+)
• Length: 266 a.a.
• NCBI ID: WP_406818286.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain STK71-E
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4308097..4318897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3N41_RS21160 (AB3N41_21155)	gspH	4308253..4308768 (+)	516	WP_004194939.1	type II secretion system minor pseudopilin GspH	-
AB3N41_RS21165 (AB3N41_21160)	gspI	4308765..4309130 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB3N41_RS21170 (AB3N41_21165)	gspJ	4309127..4309723 (+)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
AB3N41_RS21175 (AB3N41_21170)	gspK	4309720..4310706 (+)	987	WP_406818284.1	type II secretion system minor pseudopilin GspK	-
AB3N41_RS21180 (AB3N41_21175)	gspL	4310693..4311886 (+)	1194	WP_406818285.1	type II secretion system protein GspL	-
AB3N41_RS21185 (AB3N41_21180)	-	4311879..4312364 (+)	486	WP_004151943.1	type II secretion system protein M	-
AB3N41_RS21190 (AB3N41_21185)	-	4312354..4313100 (+)	747	WP_085838585.1	type II secretion system protein N	-
AB3N41_RS21195 (AB3N41_21190)	pilD	4313097..4313897 (+)	801	WP_406818286.1	prepilin peptidase	Machinery gene
AB3N41_RS21200 (AB3N41_21195)	hrpB	4313945..4316374 (-)	2430	WP_406818287.1	ATP-dependent helicase HrpB	-
AB3N41_RS21205 (AB3N41_21200)	thpR	4316447..4316983 (+)	537	WP_085838587.1	RNA 2',3'-cyclic phosphodiesterase	-
AB3N41_RS21210 (AB3N41_21205)	sfsA	4316983..4317699 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB3N41_RS21215 (AB3N41_21210)	dksA	4317862..4318317 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29345.98 Da
• Isoelectric Point: 8.6099

>NTDB_id=1024595 AB3N41_RS21195 WP_406818286.1 4313097..4313897(+) (pilD) [Klebsiella pneumoniae strain STK71-E]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERLTLSTPGSSCPQCRQPIAWLDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1024595 AB3N41_RS21195 WP_406818286.1 4313097..4313897(+) (pilD) [Klebsiella pneumoniae strain STK71-E]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGCTAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCTGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.811	99.624	0.496
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425