Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DQN52_RS10355 Genome accession   NZ_LS483426
Coordinates   1918836..1921115 (+) Length   759 a.a.
NCBI ID   WP_003787624.1    Uniprot ID   F5S8B5
Organism   Kingella kingae strain NCTC10529     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1913836..1926115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS10335 (NCTC10529_02014) - 1914397..1915311 (+) 915 WP_003787629.1 GTP-binding protein -
  DQN52_RS10340 (NCTC10529_02015) - 1915466..1917547 (+) 2082 WP_003787627.1 carbon starvation CstA family protein -
  DQN52_RS10345 (NCTC10529_02016) - 1917555..1917749 (+) 195 WP_032827794.1 YbdD/YjiX family protein -
  DQN52_RS10350 (NCTC10529_02017) - 1917836..1918660 (+) 825 WP_003787625.1 pyruvate, water dikinase regulatory protein -
  DQN52_RS10355 (NCTC10529_02018) comA 1918836..1921115 (+) 2280 WP_003787624.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQN52_RS10360 (NCTC10529_02019) msbA 1921482..1923332 (+) 1851 WP_003787620.1 lipid A export permease/ATP-binding protein MsbA -
  DQN52_RS10370 (NCTC10529_02020) dinB 1923538..1924587 (-) 1050 WP_032827768.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 759 a.a.        Molecular weight: 83691.76 Da        Isoelectric Point: 8.8291

>NTDB_id=1024406 DQN52_RS10355 WP_003787624.1 1918836..1921115(+) (comA) [Kingella kingae strain NCTC10529]
MPPTRYLAAFCIGAISSFYLPEQGNVWAWCVGLLLCAGLAFCLRRVAWQQKAACTFLCLLLGAIYAIERTEIALSQAYPA
QLYPTSQTIRVQVTGLPETDENGRTRFIGIAQTANQQNYRVLFQDYYARDWRVGDVWQTTARIRAAVATRNPVGFDREAW
ALANGIDGMASLGKEREAVSVSTKSSLHFFNQLRADIVQTWQRNASADYPQGVGLMTALAVGNRSDLSQAAWDSFRPLGL
NHLISISGLHISMVGVLAAWLAQRCMRLLPVLPARPKVISIIVGWLAAVVYTGLAGWEIPALRSLIMLTVWAIAWLARGH
WGVWQTWWAACTAVLLYQPTSVLAVGFWLSFGLVGALLWALSCRLPSRPKPYDTLRQAFIGQWAATLVGGIATIFLFGIL
AVYSPLVNAVAIPFFSSILTPLALVASALPFAPLQRLAAWLGEHTIHILLALSRHLPEQAFAQPPSFLFWLTIFSTLIIL
LPRGTALKPLACVIIASFLLYTPPAPRAPLAVHVWDVGQGLSVLLQTRHHNLLFDTGTPAAEMALLPNLRALGIQQIDTL
VLSHHDNDHDGGYAALHRAMPIRQTWAGQPAHYANAKPCTHSTNWQQDGVWFEFLTPNTQSDNDNDQSCVLRIVAGEQAL
LIMGDVGNDGETALLRQYGEQLASQVLVLGHHGSKSSSHARFLDHVAPSVAIASSGFANHFRHPHPDVQQRLASRQIALW
RTDTQGSLHFELGNHRAIELIEQQKKWWQRKPFAALPPS

Nucleotide


Download         Length: 2280 bp        

>NTDB_id=1024406 DQN52_RS10355 WP_003787624.1 1918836..1921115(+) (comA) [Kingella kingae strain NCTC10529]
ATGCCCCCAACACGCTACTTGGCTGCCTTTTGCATTGGCGCGATAAGCAGTTTTTATTTGCCCGAACAAGGCAATGTGTG
GGCGTGGTGTGTGGGTTTGCTATTGTGTGCAGGTTTGGCTTTTTGTTTACGCCGTGTCGCGTGGCAACAAAAAGCAGCCT
GCACTTTTTTGTGCCTACTTTTGGGCGCGATTTATGCGATTGAGCGTACCGAAATCGCGCTATCGCAAGCCTATCCAGCA
CAACTGTATCCGACTTCGCAAACGATTCGCGTACAGGTAACGGGTTTGCCTGAAACCGATGAAAACGGCAGAACGCGCTT
TATTGGCATCGCCCAAACAGCCAATCAACAAAACTATCGCGTGCTGTTCCAAGATTATTATGCGCGAGACTGGCGCGTGG
GCGATGTGTGGCAAACGACTGCGCGTATTCGTGCGGCGGTTGCCACGCGCAATCCAGTAGGCTTTGACCGCGAAGCGTGG
GCATTAGCAAACGGCATAGACGGCATGGCATCGTTGGGCAAAGAACGTGAAGCAGTCTCCGTGTCCACCAAAAGCAGCCT
GCACTTTTTTAACCAACTTCGCGCCGACATCGTGCAAACATGGCAGCGCAACGCCAGCGCAGACTATCCGCAAGGCGTGG
GCTTGATGACGGCTTTGGCGGTGGGCAATCGCAGCGATTTGTCGCAGGCTGCTTGGGATTCGTTTCGTCCGTTGGGACTG
AATCATTTAATTAGCATTTCGGGTTTGCACATTAGCATGGTGGGCGTGTTGGCAGCGTGGTTGGCGCAGCGTTGTATGCG
ACTGCTGCCTGTGTTGCCAGCGCGTCCCAAAGTCATCAGCATAATCGTGGGCTGGTTGGCGGCGGTGGTTTATACGGGTT
TGGCAGGCTGGGAAATTCCTGCACTTCGCAGCTTAATCATGCTCACGGTGTGGGCAATCGCGTGGCTGGCGCGTGGACAT
TGGGGCGTGTGGCAAACGTGGTGGGCAGCCTGCACCGCCGTGTTGCTGTATCAACCCACATCGGTGCTGGCGGTTGGGTT
TTGGCTATCGTTTGGCTTGGTGGGCGCGTTGTTGTGGGCGTTATCGTGCAGGCTGCCTAGTCGCCCCAAACCATACGACA
CATTGCGCCAAGCATTCATCGGGCAATGGGCGGCAACGCTGGTGGGCGGCATTGCCACGATTTTTTTGTTTGGCATACTC
GCCGTGTACAGCCCATTGGTTAATGCTGTTGCCATACCGTTTTTTTCTAGCATACTCACACCGCTGGCATTAGTCGCGTC
CGCCCTGCCATTCGCACCACTGCAACGCCTAGCCGCATGGTTGGGCGAACACACCATACATATCTTGCTCGCATTAAGCC
GACATCTGCCCGAACAAGCCTTCGCACAACCGCCTAGTTTCTTGTTTTGGCTGACCATTTTTTCCACGCTGATTATTTTG
TTACCACGCGGCACAGCACTCAAACCGCTCGCTTGCGTCATCATCGCCAGTTTTTTGCTCTACACGCCCCCTGCCCCACG
CGCACCGCTTGCCGTTCACGTTTGGGACGTAGGGCAAGGCTTGTCGGTGCTATTGCAAACGCGCCACCACAATCTTTTGT
TTGACACAGGCACACCAGCCGCTGAAATGGCATTGTTACCCAATCTACGTGCACTCGGCATACAGCAAATAGACACGCTC
GTCTTATCGCACCACGACAACGACCACGATGGCGGCTACGCAGCATTGCACCGCGCTATGCCAATCCGCCAAACATGGGC
AGGGCAGCCTGCACATTACGCCAATGCCAAGCCCTGCACACACAGCACAAATTGGCAACAAGACGGCGTGTGGTTTGAAT
TTTTAACGCCCAACACGCAATCCGACAACGACAACGACCAAAGCTGCGTATTGCGAATTGTGGCTGGCGAACAGGCGTTG
CTGATAATGGGCGATGTGGGCAACGATGGCGAAACCGCCCTGCTCCGTCAATATGGCGAACAACTAGCAAGTCAAGTATT
GGTGCTGGGGCATCACGGCAGCAAATCGTCCAGCCACGCCCGTTTTTTAGACCACGTTGCGCCCAGCGTTGCCATTGCCA
GCAGCGGTTTTGCCAACCATTTTCGCCACCCACACCCTGATGTACAGCAGCGTTTAGCCAGCCGACAAATTGCACTTTGG
CGCACCGACACGCAAGGCAGCCTGCACTTTGAACTGGGCAACCATCGCGCGATTGAATTGATTGAACAGCAAAAAAAATG
GTGGCAACGCAAGCCGTTTGCCGCGCTGCCACCCAGTTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(516-579)

Competence protein (Competence)

(219-480)

Domain of unknown function (DUF4131) (DUF4131)

(24-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S8B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

45.545

93.149

0.424