Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ECRM12581_RS17680 Genome accession   NZ_CP007136
Coordinates   3436156..3436671 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O145:H28 str. RM12581     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3431156..3441671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM12581_RS17660 (ECRM12581_17385) emrA 3431306..3432478 (+) 1173 WP_001400789.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ECRM12581_RS17665 (ECRM12581_17390) emrB 3432495..3434033 (+) 1539 WP_001400788.1 multidrug efflux MFS transporter permease subunit EmrB -
  ECRM12581_RS17670 (ECRM12581_17395) - 3434291..3434998 (+) 708 WP_025404440.1 RNA ligase family protein -
  ECRM12581_RS17675 - 3434995..3436107 (+) 1113 Protein_3396 AAA family ATPase -
  ECRM12581_RS17680 (ECRM12581_17405) luxS 3436156..3436671 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ECRM12581_RS17685 (ECRM12581_17410) gshA 3436821..3438377 (-) 1557 WP_000611829.1 glutamate--cysteine ligase -
  ECRM12581_RS17690 (ECRM12581_17415) yqaA 3438450..3438878 (-) 429 WP_001287453.1 YqaA family protein -
  ECRM12581_RS17695 (ECRM12581_17420) yqaB 3438875..3439441 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ECRM12581_RS17730 (ECRM12581_17425) csrA 3440899..3441084 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=102440 ECRM12581_RS17680 WP_001130211.1 3436156..3436671(-) (luxS) [Escherichia coli O145:H28 str. RM12581]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=102440 ECRM12581_RS17680 WP_001130211.1 3436156..3436671(-) (luxS) [Escherichia coli O145:H28 str. RM12581]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment