Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DQN52_RS05890 Genome accession   NZ_LS483426
Coordinates   1082211..1082870 (+) Length   219 a.a.
NCBI ID   WP_003785824.1    Uniprot ID   F5S5N3
Organism   Kingella kingae strain NCTC10529     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1077211..1087870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS05875 (NCTC10529_01147) serB 1077683..1078519 (+) 837 WP_003785820.1 phosphoserine phosphatase SerB -
  DQN52_RS05880 (NCTC10529_01148) - 1078595..1080964 (-) 2370 WP_003785821.1 penicillin-binding protein 1A -
  DQN52_RS05885 (NCTC10529_01149) pilM 1081106..1082209 (+) 1104 WP_003785822.1 type IV pilus biogenesis protein PilM -
  DQN52_RS05890 (NCTC10529_01150) pilN 1082211..1082870 (+) 660 WP_003785824.1 PilN domain-containing protein Machinery gene
  DQN52_RS05895 (NCTC10529_01151) - 1082873..1083496 (+) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  DQN52_RS05900 (NCTC10529_01152) pilP 1083530..1084060 (+) 531 WP_003785826.1 pilus assembly protein PilP Machinery gene
  DQN52_RS05905 (NCTC10529_01153) pilQ 1084094..1086196 (+) 2103 WP_003785828.1 type IV pilus secretin PilQ Machinery gene
  DQN52_RS05910 (NCTC10529_01154) - 1086253..1086765 (+) 513 WP_111694434.1 shikimate kinase -
  DQN52_RS05915 (NCTC10529_01155) aroB 1086765..1087847 (+) 1083 WP_003785833.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23543.16 Da        Isoelectric Point: 9.5918

>NTDB_id=1024383 DQN52_RS05890 WP_003785824.1 1082211..1082870(+) (pilN) [Kingella kingae strain NCTC10529]
MNLIKINLLPYREMEEQKKKKQFRTIMVIGAAAGLVAAGLIYSSLAGMILNQQGRNESLQAGIATLDKELEEIKTLNEQK
RNFLERRQRIAELDNKRFEGARIIDTLNQLVPDGAYLLSLKGDASKNLVSNKYAITGKAISDNKVAVLMTALPSTGIFEQ
PELVKIEKTDDGQQFILNALLLEQKVIVPDVVGGGASVSSGAAAASVTSTPATSASGGK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1024383 DQN52_RS05890 WP_003785824.1 1082211..1082870(+) (pilN) [Kingella kingae strain NCTC10529]
ATGAATTTGATTAAGATTAACTTGCTTCCCTATCGTGAGATGGAAGAGCAAAAGAAAAAGAAACAATTTCGAACAATCAT
GGTAATTGGTGCAGCAGCAGGTTTGGTTGCTGCGGGTCTGATTTACTCATCATTGGCTGGTATGATACTGAATCAGCAGG
GGCGTAACGAAAGTTTGCAGGCTGGTATTGCCACGCTAGATAAAGAATTGGAAGAAATTAAAACGCTCAATGAGCAAAAA
CGTAATTTTTTGGAACGTCGTCAACGTATCGCAGAATTGGATAATAAGCGATTTGAGGGTGCGCGAATTATTGATACATT
AAATCAACTTGTTCCCGACGGTGCTTATTTGTTGTCTTTGAAAGGCGATGCTTCTAAGAATTTGGTAAGTAATAAGTATG
CTATTACTGGTAAAGCGATTAGCGATAACAAAGTTGCTGTTTTAATGACTGCTTTACCAAGTACGGGTATTTTTGAACAG
CCAGAATTGGTGAAAATTGAAAAAACCGATGATGGTCAACAATTTATCTTGAATGCATTATTATTGGAACAAAAAGTGAT
TGTTCCTGATGTGGTGGGTGGTGGTGCATCTGTTTCATCAGGTGCAGCAGCTGCGTCGGTAACATCAACACCTGCTACAA
GTGCATCGGGAGGTAAATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S5N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

45.556

82.192

0.374