Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   AB3N52_RS01200 Genome accession   NZ_CP162158
Coordinates   221167..221793 (-) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae strain STK48-C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 216167..226793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N52_RS01185 (AB3N52_01190) helD 216405..218459 (-) 2055 WP_095440303.1 DNA helicase IV -
  AB3N52_RS01190 (AB3N52_01195) - 218582..219028 (+) 447 WP_013097253.1 YccF domain-containing protein -
  AB3N52_RS01195 (AB3N52_01200) yccS 219048..221210 (+) 2163 WP_095440304.1 YccS family putative transporter -
  AB3N52_RS01200 (AB3N52_01205) sxy/tfoX 221167..221793 (-) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  AB3N52_RS01205 (AB3N52_01210) sulA 222011..222520 (+) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  AB3N52_RS01210 (AB3N52_01215) ompA 222875..223930 (+) 1056 WP_044158562.1 porin OmpA -
  AB3N52_RS01215 (AB3N52_01220) matP 223994..224446 (-) 453 WP_013097258.1 macrodomain Ter protein MatP -
  AB3N52_RS01220 (AB3N52_01225) - 224633..226393 (+) 1761 WP_095440305.1 Lon protease family protein -

Sequence


Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=1024377 AB3N52_RS01200 WP_013097255.1 221167..221793(-) (sxy/tfoX) [Enterobacter cloacae strain STK48-C]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1024377 AB3N52_RS01200 WP_013097255.1 221167..221793(-) (sxy/tfoX) [Enterobacter cloacae strain STK48-C]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGTGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATCCAGCGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAGAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567


Multiple sequence alignment