Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DQN52_RS04880 Genome accession   NZ_LS483426
Coordinates   908082..911522 (-) Length   1146 a.a.
NCBI ID   WP_003785495.1    Uniprot ID   F5S536
Organism   Kingella kingae strain NCTC10529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 903082..916522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS04865 (NCTC10529_00954) - 905803..906468 (+) 666 WP_032133847.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  DQN52_RS04870 (NCTC10529_00955) - 906490..907440 (+) 951 WP_050792388.1 phosphatidate cytidylyltransferase -
  DQN52_RS04875 (NCTC10529_00956) - 907482..907790 (+) 309 WP_003785494.1 SEL1-like repeat protein -
  DQN52_RS04880 (NCTC10529_00957) recC 908082..911522 (-) 3441 WP_003785495.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DQN52_RS04885 (NCTC10529_00958) - 911697..912578 (-) 882 WP_003785496.1 peptidyl-prolyl cis-trans isomerase -
  DQN52_RS04890 (NCTC10529_00959) - 912594..912866 (-) 273 WP_003785498.1 BolA family transcriptional regulator -
  DQN52_RS04895 (NCTC10529_00960) - 912863..913156 (-) 294 WP_173020718.1 YciI family protein -
  DQN52_RS04900 (NCTC10529_00961) - 913153..913698 (-) 546 WP_003785501.1 septation protein A -
  DQN52_RS04905 (NCTC10529_00962) - 913787..913984 (-) 198 WP_003785502.1 DUF2788 domain-containing protein -
  DQN52_RS04910 (NCTC10529_00963) metZ 914076..915254 (-) 1179 WP_003785503.1 O-succinylhomoserine sulfhydrylase -
  DQN52_RS04920 (NCTC10529_00964) iscX 915468..915665 (+) 198 WP_003785505.1 Fe-S cluster assembly protein IscX -

Sequence

Protein


Download         Length: 1146 a.a.        Molecular weight: 130964.01 Da        Isoelectric Point: 5.6064

>NTDB_id=1024377 DQN52_RS04880 WP_003785495.1 908082..911522(-) (recC) [Kingella kingae strain NCTC10529]
MLHLYQSNQLENLAQMMLNLHQSQPLSHPLQAEYILVQSQGMRRYINQYWAQHSPIAANLHFELPAQLAWQLMREALPNA
PKLSPFSSDVMQWRLLQLFQSRHFAEDSELASAQEMLRDYVQQGEMSAYQLARQLADVFDQYLMYRPDWIEAWSNQQNVA
ELSQREDCAQEQQWQAAIWRELLRDEQRAPHRAQMQRVLMDSLANQTIRRLPERILMFGITALAPSHLQLLQEIAKQRDV
HIFALNPSAMYWGDLLEPAQILQQTDDVDLSLQGHPLLASWGKQGRDFFNDLSVAEARQDEAHQQFAEQAKSPNLLHSLQ
YQIQQLVLPEQAHDDDWLAQHDAYLRESVLQQNLDVGEYYVRHVQQDLSPEQKAMVQLNADSSLHIHSAHSPLRELQILK
DRILLALAQNPSWQPHDIAVLTPNIEPYAPFIDSVFGEYSDAPLPYSLADVKLTRKQPALDALAQALDLLNSRFEAEQVL
ALLNTEPVLQQWHINRADLPLLHSAVAELNIRWGSDASERAQYGDANNLFTWQQGLDRLVLGWLQPAQSGATWQNIAPHA
SHPDHLPILANFVAFVRFLSHTKQQWQQPASVAQWCERLQQFTQTLLGDGDTTQQAALQTWRKALDDWQEQAEIAQFSEP
LSSPIACQHIRRSLDEPTDAGLLRGGITFCSMVPMRSLPFKMLCLLGLNDGTFPRNTKAAPFDLIAKQPRKGDRSRRDDD
RYLFLEAILSAREQLYLSYIGRDIRSDAERAPSTLLSELVDTISALSDVPSSDLYQHWVTHHPLQAFSRRYFASAEQDNP
HLSSTRSDFAHALNLAQQGQTHQAKNFVDWRNTDNDSATFIRQKDFLRFWRNPVRHWLHHTLNWQSSYFAGNHESEEPFL
SNQPRRLDDAYVQARMHNQSFDDTAAYLRAQSLLPAGELGKQEAKSYEIAAKALDTNLLNSPRLPHRSGELACGQGSLHF
DLSHNHEAGQILLARDFLSDNNTHGKLTSPDQVQLLLQHLIYCAATPDHEPVARQTHYVSLTQQMSLPPMSQAQAQAALS
VWLAYYAQGQQAPLPYFARVNWAAAMALYTKKDANWLAAQDAAADKYHAGYFGMAQEDYPEVQLVFGRDPDAEPPYTLPE
FQQITEDLFEPLQVCLQVFADNKDKK

Nucleotide


Download         Length: 3441 bp        

>NTDB_id=1024377 DQN52_RS04880 WP_003785495.1 908082..911522(-) (recC) [Kingella kingae strain NCTC10529]
ATGCTGCACCTATATCAATCCAACCAACTCGAAAACTTGGCGCAGATGATGTTAAACCTACATCAATCGCAGCCTTTGTC
GCACCCGTTGCAGGCGGAATACATTTTGGTGCAAAGCCAAGGCATGCGCCGCTACATCAACCAATATTGGGCGCAGCATT
CGCCCATTGCCGCCAATTTGCACTTTGAATTGCCCGCGCAACTGGCGTGGCAACTGATGCGCGAAGCCTTGCCCAATGCG
CCCAAATTAAGCCCATTTTCTAGCGATGTGATGCAATGGCGATTGCTGCAATTATTCCAATCGCGCCATTTTGCGGAAGA
CAGCGAACTGGCATCGGCACAAGAAATGTTGCGCGATTATGTGCAGCAGGGCGAAATGTCGGCGTATCAGTTAGCGCGAC
AGCTTGCCGATGTGTTCGACCAATATTTGATGTATCGCCCCGATTGGATTGAAGCGTGGTCAAATCAACAAAATGTAGCG
GAATTGTCGCAGCGCGAAGATTGCGCCCAAGAACAGCAATGGCAAGCGGCAATTTGGCGCGAATTGTTGCGCGATGAACA
ACGCGCTCCGCATCGAGCGCAAATGCAGCGCGTGTTAATGGATTCGTTGGCAAATCAAACAATTCGCAGGCTGCCCGAGC
GGATTTTAATGTTTGGGATTACTGCCCTTGCGCCATCGCATTTGCAACTGTTGCAAGAAATCGCCAAACAGCGCGATGTA
CATATTTTTGCGCTCAACCCCAGTGCGATGTATTGGGGCGATTTGCTTGAACCTGCACAAATTTTGCAGCAAACCGATGA
CGTGGATTTATCGTTGCAAGGACACCCATTGCTGGCATCGTGGGGCAAACAAGGGCGCGATTTTTTCAACGATTTGAGCG
TTGCCGAAGCGCGTCAAGATGAAGCACATCAGCAATTTGCCGAGCAAGCGAAGTCGCCCAATTTACTGCACAGTTTGCAA
TACCAAATCCAGCAGCTAGTATTGCCCGAACAGGCGCACGATGACGATTGGTTGGCACAGCACGATGCTTATTTGCGCGA
ATCGGTGTTGCAACAAAATTTGGACGTGGGCGAATACTATGTCCGCCACGTTCAGCAAGATTTGTCGCCCGAACAAAAAG
CGATGGTGCAGCTCAACGCCGATAGCAGCCTGCACATTCACAGCGCACACAGTCCGTTGCGCGAATTGCAGATTTTAAAA
GACCGCATTTTGCTTGCTTTGGCGCAAAACCCAAGTTGGCAGCCACACGATATTGCCGTACTCACCCCCAATATTGAGCC
ATACGCGCCGTTTATTGACAGCGTGTTTGGCGAATATTCCGATGCGCCTTTGCCGTATTCGCTTGCCGATGTCAAACTCA
CGCGCAAGCAGCCTGCACTTGATGCTTTGGCGCAAGCATTGGATTTGCTCAACAGCCGTTTTGAAGCGGAACAAGTGTTG
GCATTGCTCAACACCGAACCCGTGTTGCAACAATGGCACATCAACCGCGCCGACTTGCCCTTGCTGCACAGCGCGGTTGC
CGAACTCAATATCCGCTGGGGCAGCGATGCCAGCGAACGCGCCCAATATGGCGATGCCAATAATTTGTTTACATGGCAAC
AAGGGCTAGACCGCTTGGTTTTGGGCTGGTTGCAGCCTGCACAATCAGGCGCAACGTGGCAAAACATCGCACCACACGCC
AGCCACCCCGACCATTTGCCGATTTTGGCGAATTTTGTCGCGTTTGTGCGATTCCTGTCCCACACCAAACAACAATGGCA
ACAACCAGCCAGCGTGGCGCAATGGTGCGAACGCTTGCAACAGTTCACACAAACCTTATTGGGCGATGGCGACACCACGC
AACAAGCCGCCTTGCAAACGTGGCGCAAAGCCTTGGACGATTGGCAAGAGCAAGCCGAAATCGCCCAATTTAGCGAACCA
TTATCCAGCCCCATTGCCTGCCAACACATTCGCCGTAGCTTGGACGAACCAACCGATGCAGGCTTGTTGCGCGGTGGCAT
CACGTTTTGCAGCATGGTTCCGATGCGCTCTTTGCCGTTTAAGATGTTGTGTTTATTGGGATTGAATGACGGCACGTTTC
CGCGCAACACCAAAGCCGCACCGTTTGACTTAATCGCCAAACAACCGCGCAAAGGCGACCGTTCGCGCCGTGATGACGAC
CGTTATTTGTTTTTGGAAGCGATTTTATCGGCACGCGAACAGCTTTATTTGTCCTACATTGGGCGCGATATTCGCAGCGA
TGCCGAACGCGCACCGTCCACGCTATTGAGCGAATTGGTGGACACGATTTCCGCTTTGAGCGATGTGCCAAGCAGCGATT
TGTATCAGCATTGGGTTACGCATCACCCCTTGCAGGCGTTTTCGCGCCGATATTTTGCATCTGCCGAACAGGACAACCCA
CACTTATCCAGCACGCGCAGCGACTTTGCCCACGCGCTGAATTTGGCGCAACAAGGTCAAACGCATCAAGCCAAAAATTT
TGTCGATTGGCGCAACACAGACAACGACTCAGCCACTTTTATCCGCCAAAAAGATTTTTTACGCTTTTGGCGCAACCCCG
TTCGCCATTGGCTGCACCACACTTTGAACTGGCAAAGCTCGTATTTTGCAGGCAACCACGAAAGCGAAGAGCCATTTTTG
TCCAACCAACCGCGCCGTTTGGACGATGCCTATGTGCAGGCGCGAATGCATAATCAATCGTTTGATGACACGGCGGCTTA
TCTTCGCGCCCAAAGTTTGTTGCCAGCAGGCGAACTGGGTAAGCAAGAAGCAAAAAGTTATGAAATTGCAGCAAAGGCGT
TGGATACCAATTTGCTTAATAGTCCGCGTTTGCCGCATCGTTCGGGCGAATTAGCTTGCGGACAGGGCAGCCTGCACTTT
GATTTGTCGCACAACCATGAAGCAGGGCAAATCTTGTTGGCGCGTGATTTTTTGAGCGATAACAACACGCACGGCAAATT
GACATCGCCCGACCAAGTGCAACTGTTGCTGCAACATTTGATTTATTGCGCGGCAACGCCCGACCATGAACCTGTGGCAC
GGCAAACGCATTATGTGAGCCTGACACAGCAAATGAGCTTGCCACCGATGTCGCAAGCGCAAGCGCAGGCTGCTTTGAGC
GTGTGGCTGGCCTATTACGCGCAAGGGCAGCAAGCACCGTTGCCATATTTTGCGCGAGTAAACTGGGCGGCGGCGATGGC
GTTGTACACCAAAAAAGATGCCAACTGGTTGGCAGCGCAAGACGCAGCGGCAGACAAATACCACGCTGGCTATTTTGGCA
TGGCGCAGGAAGATTACCCCGAAGTACAGCTGGTGTTTGGGCGCGACCCCGATGCCGAACCGCCATACACCTTGCCCGAA
TTTCAGCAGATAACCGAAGATTTGTTTGAGCCGTTGCAGGTGTGTTTGCAGGTGTTTGCGGACAATAAAGATAAGAAATA
G

Domains

Predicted by InterProScan.

RecC C-terminal domain (RecC_C)

(841-1067)

Exodeoxyribonuclease V, gamma subunit (RecC_N)

(2-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S536

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

44.493

99.04

0.441
  recC Neisseria gonorrhoeae MS11

44.405

99.04

0.44

Multiple sequence alignment