Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ56_RS08655 Genome accession   NZ_AP027788
Coordinates   1812662..1813291 (+) Length   209 a.a.
NCBI ID   WP_106464856.1    Uniprot ID   -
Organism   Escherichia coli strain 2017.04.02CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807662..1818291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ56_RS08635 (VEE54_16670) ycbZ 1808063..1809823 (-) 1761 WP_000156526.1 Lon protease family protein -
  AABJ56_RS08640 (VEE54_16680) matP 1810009..1810461 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABJ56_RS08645 (VEE54_16690) ompA 1810537..1811577 (-) 1041 WP_000750416.1 porin OmpA -
  AABJ56_RS08650 (VEE54_16710) sulA 1811934..1812443 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABJ56_RS08655 (VEE54_16720) sxy/tfoX 1812662..1813291 (+) 630 WP_106464856.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ56_RS08660 (VEE54_16730) yccS 1813254..1815416 (-) 2163 WP_000875020.1 YccS family putative transporter -
  AABJ56_RS08665 (VEE54_16740) yccF 1815426..1815872 (-) 447 WP_001261231.1 YccF domain-containing protein -
  AABJ56_RS08670 (VEE54_16760) helD 1815995..1818049 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24193.10 Da        Isoelectric Point: 9.0428

>NTDB_id=102436 AABJ56_RS08655 WP_106464856.1 1812662..1813291(+) (sxy/tfoX) [Escherichia coli strain 2017.04.02CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLECAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102436 AABJ56_RS08655 WP_106464856.1 1812662..1813291(+) (sxy/tfoX) [Escherichia coli strain 2017.04.02CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAATGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment