Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB3N39_RS18495 Genome accession   NZ_CP162152
Coordinates   3940405..3941838 (+) Length   477 a.a.
NCBI ID   WP_111964974.1    Uniprot ID   -
Organism   Enterobacter vonholyi strain STK80-C     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3935405..3946838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N39_RS18465 (AB3N39_18465) - 3935972..3936949 (+) 978 WP_039260412.1 calcium/sodium antiporter -
  AB3N39_RS18470 (AB3N39_18470) kdsD 3936963..3937949 (+) 987 WP_133295211.1 arabinose-5-phosphate isomerase KdsD -
  AB3N39_RS18475 (AB3N39_18475) kdsC 3937964..3938530 (+) 567 WP_136195212.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AB3N39_RS18480 (AB3N39_18480) lptC 3938527..3939102 (+) 576 WP_115876356.1 LPS export ABC transporter periplasmic protein LptC -
  AB3N39_RS18485 (AB3N39_18485) lptA 3939071..3939625 (+) 555 WP_133295212.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  AB3N39_RS18490 (AB3N39_18490) lptB 3939632..3940357 (+) 726 WP_023309359.1 LPS export ABC transporter ATP-binding protein -
  AB3N39_RS18495 (AB3N39_18495) rpoN/rpoN1 3940405..3941838 (+) 1434 WP_111964974.1 RNA polymerase factor sigma-54 Machinery gene
  AB3N39_RS18500 (AB3N39_18500) hpf 3941861..3942148 (+) 288 WP_111964975.1 ribosome hibernation promoting factor -
  AB3N39_RS18505 (AB3N39_18505) ptsN 3942231..3942722 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AB3N39_RS18510 (AB3N39_18510) rapZ 3942768..3943622 (+) 855 WP_008501442.1 RNase adapter RapZ -
  AB3N39_RS18515 (AB3N39_18515) npr 3943619..3943891 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  AB3N39_RS18520 (AB3N39_18520) mtgA 3943931..3944656 (-) 726 WP_133295213.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  AB3N39_RS18525 (AB3N39_18525) elbB 3944653..3945306 (-) 654 WP_111964977.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54139.91 Da        Isoelectric Point: 4.3332

>NTDB_id=1024304 AB3N39_RS18495 WP_111964974.1 3940405..3941838(+) (rpoN/rpoN1) [Enterobacter vonholyi strain STK80-C]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARVIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1024304 AB3N39_RS18495 WP_111964974.1 3940405..3941838(+) (rpoN/rpoN1) [Enterobacter vonholyi strain STK80-C]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGACACTGAAGCGCTTGATACCGCCGACGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACGCCTTCCGGTACGCGTGCGGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACTCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTCACTCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTTGACGAT
ATTCTGGAAAGCATGGGCGACGAAGAGATAGAGCTTGAGGAAGTTGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTAGCCGCAAAAGATCTGCGCGACTGCCTGCTAATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCGTGATCATCAGCGATCACCTGGATCTGCTGGCGAACCACGATTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGATGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCACTCGATCCACGCCCGGGACAGTCAATCCAGACCAG
CGAGCCTGAGTACGTTATTCCGGACGTGCTGGTCAGAAAACACAATGGCCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTTGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCTTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGTGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCGCTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482

Multiple sequence alignment