Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3N39_RS07315 Genome accession   NZ_CP162152
Coordinates   1566977..1567603 (+) Length   208 a.a.
NCBI ID   WP_127730297.1    Uniprot ID   -
Organism   Enterobacter vonholyi strain STK80-C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561977..1572603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N39_RS07295 (AB3N39_07295) - 1562375..1564135 (-) 1761 WP_143344902.1 Lon protease family protein -
  AB3N39_RS07300 (AB3N39_07300) matP 1564322..1564774 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  AB3N39_RS07305 (AB3N39_07305) ompA 1564840..1565895 (-) 1056 WP_023311028.1 porin OmpA -
  AB3N39_RS07310 (AB3N39_07310) sulA 1566250..1566759 (-) 510 WP_111964573.1 SOS-induced cell division inhibitor SulA -
  AB3N39_RS07315 (AB3N39_07315) sxy/tfoX 1566977..1567603 (+) 627 WP_127730297.1 TfoX/Sxy family DNA transformation protein Regulator
  AB3N39_RS07320 (AB3N39_07320) yccS 1567560..1569722 (-) 2163 WP_133294117.1 YccS family putative transporter -
  AB3N39_RS07325 (AB3N39_07325) - 1569742..1570188 (-) 447 WP_111964540.1 YccF domain-containing protein -
  AB3N39_RS07330 (AB3N39_07330) helD 1570312..1572366 (+) 2055 WP_367897177.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24072.67 Da        Isoelectric Point: 8.6320

>NTDB_id=1024293 AB3N39_RS07315 WP_127730297.1 1566977..1567603(+) (sxy/tfoX) [Enterobacter vonholyi strain STK80-C]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEEMLRELGARACWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPADIRRELTEWFNALTEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1024293 AB3N39_RS07315 WP_127730297.1 1566977..1567603(+) (sxy/tfoX) [Enterobacter vonholyi strain STK80-C]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCTCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCACCGCGCGTT
GTTTGGCGGCTATACCCTTGCGGTGGATGATGCTGTTTTTGCCATGGTCTCAGATGGCGAGCTTTACCTTCGCGCCTGTG
AGGAGAGTGCCAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGTCCGGTGCTGCTCAAC
TATTATCGTGTTGATGACGGATTATGGCAGGACAGGGAGCGGTTACTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGTTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATCACCAATGAGGAAATGTTGCGGGAGCTTGGTGCAAGGGCGTGCTGGCTAAAGATGCGGGCAAAAAAT
AAAGCGCTGAGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAAGCGGCACTCCCGGCAGACAT
TCGCCGGGAGCTCACGGAGTGGTTTAATGCGTTGACTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577

Multiple sequence alignment