Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DQN36_RS02235 Genome accession   NZ_LS483425
Coordinates   421397..422431 (+) Length   344 a.a.
NCBI ID   WP_010922583.1    Uniprot ID   A0A0H2UWB0
Organism   Streptococcus pyogenes strain NCTC13737     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 416397..427431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN36_RS02205 (NCTC13737_00435) tsaE 417462..417923 (+) 462 WP_009880751.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQN36_RS02210 (NCTC13737_00436) - 417898..418422 (+) 525 WP_023078656.1 GNAT family N-acetyltransferase -
  DQN36_RS02215 (NCTC13737_00437) brpA 418431..419714 (+) 1284 WP_030126322.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQN36_RS02220 (NCTC13737_00438) - 419825..420181 (-) 357 WP_014407784.1 hypothetical protein -
  DQN36_RS02225 (NCTC13737_00439) - 420178..420597 (-) 420 WP_002983376.1 HIT family protein -
  DQN36_RS02230 (NCTC13737_00440) pptA 420669..421394 (+) 726 WP_111704036.1 ABC transporter ATP-binding protein Regulator
  DQN36_RS02235 (NCTC13737_00441) pptB 421397..422431 (+) 1035 WP_010922583.1 ABC transporter permease Regulator
  DQN36_RS02240 (NCTC13737_00442) ccrZ 422495..423286 (+) 792 WP_111704037.1 cell cycle regulator CcrZ -
  DQN36_RS02245 (NCTC13737_00443) trmB 423286..423921 (+) 636 WP_111704038.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQN36_RS02255 (NCTC13737_00445) rimP 424180..424716 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQN36_RS02260 (NCTC13737_00446) nusA 424891..426048 (+) 1158 WP_002988817.1 transcription termination factor NusA -
  DQN36_RS02265 (NCTC13737_00447) rnpM 426064..426360 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  DQN36_RS02270 (NCTC13737_00448) - 426353..426655 (+) 303 WP_111704039.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40274.52 Da        Isoelectric Point: 10.3713

>NTDB_id=1024293 DQN36_RS02235 WP_010922583.1 421397..422431(+) (pptB) [Streptococcus pyogenes strain NCTC13737]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1024293 DQN36_RS02235 WP_010922583.1 421397..422431(+) (pptB) [Streptococcus pyogenes strain NCTC13737]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGCATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2UWB0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment