Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQN36_RS00255 Genome accession   NZ_LS483425
Coordinates   33532..34287 (+) Length   251 a.a.
NCBI ID   WP_111703934.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13737     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28532..39287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN36_RS09310 - 29572..29778 (-) 207 Protein_14 hypothetical protein -
  DQN36_RS09315 - 29934..30215 (-) 282 WP_111689438.1 transposase -
  DQN36_RS00245 (NCTC13737_00049) pcsB 30935..32131 (+) 1197 WP_111703933.1 peptidoglycan hydrolase PcsB -
  DQN36_RS00250 (NCTC13737_00050) - 32384..33346 (+) 963 WP_021340855.1 ribose-phosphate diphosphokinase -
  DQN36_RS00255 (NCTC13737_00051) recO 33532..34287 (+) 756 WP_111703934.1 DNA repair protein RecO Machinery gene
  DQN36_RS00260 (NCTC13737_00052) plsX 34390..35397 (+) 1008 WP_011284400.1 phosphate acyltransferase PlsX -
  DQN36_RS00265 (NCTC13737_00053) - 35390..35632 (+) 243 WP_002986713.1 phosphopantetheine-binding protein -
  DQN36_RS00270 (NCTC13737_00054) purC 35783..36487 (+) 705 WP_172453756.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29527.99 Da        Isoelectric Point: 6.6940

>NTDB_id=1024261 DQN36_RS00255 WP_111703934.1 33532..34287(+) (recO) [Streptococcus pyogenes strain NCTC13737]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSDVNTYRY
INNDIFRLAYASYVLALADAAIADNEPDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1024261 DQN36_RS00255 WP_111703934.1 33532..34287(+) (recO) [Streptococcus pyogenes strain NCTC13737]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTGACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAACC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCGAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment