Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | AABK30_RS14935 | Genome accession | NZ_AP027783 |
| Coordinates | 2988117..2988746 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839152.1 | Uniprot ID | - |
| Organism | Escherichia coli strain 2017-03-3CC | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2978945..3016581 | 2988117..2988746 | within | 0 |
Gene organization within MGE regions
Location: 2978945..3016581
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABK30_RS14885 (VEE74_28680) | tusE | 2979216..2979545 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| AABK30_RS14890 (VEE74_28690) | yccX | 2979542..2979820 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| AABK30_RS14895 (VEE74_28700) | rlmI | 2979915..2981105 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| AABK30_RS14900 (VEE74_28710) | hspQ | 2981163..2981480 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| AABK30_RS14905 (VEE74_28720) | yccU | 2981525..2981938 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| AABK30_RS14910 (VEE74_28730) | yccT | 2982111..2982773 (+) | 663 | WP_000847785.1 | DUF2057 family protein | - |
| AABK30_RS14915 (VEE74_28740) | mgsA | 2982869..2983327 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| AABK30_RS14920 (VEE74_28750) | helD | 2983359..2985413 (-) | 2055 | WP_087898012.1 | DNA helicase IV | - |
| AABK30_RS14925 (VEE74_28760) | yccF | 2985536..2985982 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| AABK30_RS14930 (VEE74_28770) | yccS | 2985992..2988154 (+) | 2163 | WP_023281787.1 | YccS family putative transporter | - |
| AABK30_RS14935 (VEE74_28780) | sxy/tfoX | 2988117..2988746 (-) | 630 | WP_000839152.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| AABK30_RS14940 (VEE74_28790) | sulA | 2988965..2989474 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| AABK30_RS14945 (VEE74_28810) | ompA | 2989831..2990871 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| AABK30_RS14950 (VEE74_28820) | matP | 2990947..2991399 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| AABK30_RS14955 (VEE74_28830) | ycbZ | 2991585..2993345 (+) | 1761 | WP_000156518.1 | Lon protease family protein | - |
| AABK30_RS14960 (VEE74_28840) | fabA | 2993414..2993932 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| AABK30_RS14965 (VEE74_28850) | rmf | 2994002..2994169 (-) | 168 | WP_000828646.1 | ribosome modulation factor | - |
| AABK30_RS14970 (VEE74_28860) | pqiC | 2994425..2994988 (-) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| AABK30_RS14975 (VEE74_28870) | pqiB | 2994985..2996625 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| AABK30_RS14980 (VEE74_28880) | pqiA | 2996630..2997883 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| AABK30_RS14985 (VEE74_28890) | uup | 2998013..2999920 (-) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| AABK30_RS14990 (VEE74_28900) | rlmKL | 2999932..3002040 (-) | 2109 | WP_338386973.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| AABK30_RS14995 (VEE74_28910) | ycbX | 3002284..3003393 (+) | 1110 | WP_000212426.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| AABK30_RS15000 (VEE74_28920) | zapC | 3003390..3003932 (-) | 543 | WP_001338438.1 | cell division protein ZapC | - |
| AABK30_RS15005 (VEE74_28930) | pyrD | 3004106..3005116 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| AABK30_RS15010 (VEE74_28940) | ycbF | 3005227..3005964 (-) | 738 | WP_161470831.1 | fimbrial chaperone | - |
| AABK30_RS15015 (VEE74_28950) | ycbV | 3005930..3006445 (-) | 516 | WP_210179101.1 | fimbrial protein | - |
| AABK30_RS15020 (VEE74_28960) | ycbU | 3006453..3006995 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| AABK30_RS15025 (VEE74_28970) | elfG | 3007007..3008077 (-) | 1071 | WP_001165668.1 | fimbrial protein | - |
| AABK30_RS15030 (VEE74_28980) | - | 3008068..3009687 (-) | 1620 | Protein_2942 | fimbrial biogenesis usher protein | - |
| AABK30_RS15040 (VEE74_29010) | - | 3011018..3012004 (-) | 987 | Protein_2944 | fimbria/pilus outer membrane usher protein | - |
| AABK30_RS15045 (VEE74_29020) | elfD | 3012029..3012730 (-) | 702 | WP_016242023.1 | molecular chaperone | - |
| AABK30_RS15050 (VEE74_29030) | elfA | 3012813..3013351 (-) | 539 | Protein_2946 | fimbrial protein | - |
| AABK30_RS15055 (VEE74_29040) | ssuE | 3013707..3014282 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| AABK30_RS15060 (VEE74_29050) | ssuA | 3014275..3015234 (+) | 960 | WP_001244342.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| AABK30_RS15065 (VEE74_29060) | ssuD | 3015231..3016376 (+) | 1146 | WP_033554501.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24093.97 Da Isoelectric Point: 8.8133
>NTDB_id=102423 AABK30_RS14935 WP_000839152.1 2988117..2988746(-) (sxy/tfoX) [Escherichia coli strain 2017-03-3CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=102423 AABK30_RS14935 WP_000839152.1 2988117..2988746(-) (sxy/tfoX) [Escherichia coli strain 2017-03-3CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
99.522 |
100 |
0.995 |