Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AB2S62_RS19125 Genome accession   NZ_CP162101
Coordinates   932484..933665 (+) Length   393 a.a.
NCBI ID   WP_367990008.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 927484..938665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS19110 (AB2S62_15480) - 928379..929365 (-) 987 WP_367990005.1 GTP-binding protein -
  AB2S62_RS19115 (AB2S62_15485) clcA 929827..931227 (+) 1401 WP_367990006.1 H(+)/Cl(-) exchange transporter ClcA -
  AB2S62_RS19120 (AB2S62_15490) - 931332..932306 (+) 975 WP_367990007.1 TDT family transporter -
  AB2S62_RS19125 (AB2S62_15495) cqsA 932484..933665 (+) 1182 WP_367990008.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AB2S62_RS19130 (AB2S62_15500) cqsS 933703..935748 (-) 2046 WP_367990009.1 response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43489.71 Da        Isoelectric Point: 6.4965

>NTDB_id=1024061 AB2S62_RS19125 WP_367990008.1 932484..933665(+) (cqsA) [Vibrio sp. NTOU-M3]
MNMLKSAPLLPDFIKSSLDHYIEDLMGSNQNGKHLVLGKRPTSQDIVLQSNDYLDLSNHPTIIDAQVQSLLSNTDTPFMS
GIFLQDEADKPSVEKQLARFTGFSSCLLSQSGWAANTALLQTICDTNTNVYIDFFAHMSMWEGARIAGANLHPFMHNNVR
HLKKLIRRHGPGLVVVDSIYSTIGTIAPLEEMVSISRELGCAILVDESHSLGTHGYHGAGLVNKLGLTKQVDFLTASLAK
TFAYRAGAIWCNNLANECIPFVAYPAIFSSAMLPYEIDRISATLEIILKADKEREVLAEKANALAKTLRSIGFTIRSESQ
IIALETGDERNTEKVRDYLESHGVFGAVFCRPATTPNKNIIRFSLNSSVTDAQLEKLIQVCHDAYHQPNIYFL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1024061 AB2S62_RS19125 WP_367990008.1 932484..933665(+) (cqsA) [Vibrio sp. NTOU-M3]
ATGAACATGTTAAAAAGTGCTCCGCTTCTGCCAGACTTTATTAAATCGTCTTTGGATCATTACATTGAAGATTTAATGGG
TTCTAATCAGAATGGTAAACATCTTGTATTAGGTAAGCGTCCTACATCACAAGATATCGTTTTACAAAGCAATGATTACC
TTGATTTATCAAATCATCCAACAATCATTGACGCTCAGGTTCAGTCTTTATTGAGTAACACAGATACGCCTTTTATGTCT
GGCATATTTCTTCAAGATGAAGCTGATAAACCGAGTGTAGAAAAACAACTCGCTCGATTTACCGGATTTTCTTCTTGCTT
ACTGTCTCAATCAGGCTGGGCTGCGAATACTGCCCTGTTGCAAACTATTTGCGATACCAATACCAATGTTTACATCGACT
TTTTTGCGCACATGTCAATGTGGGAAGGCGCAAGAATTGCTGGTGCAAATCTTCATCCCTTTATGCATAACAATGTACGC
CACCTCAAAAAGCTTATCCGTCGTCATGGCCCAGGGTTAGTTGTTGTTGACTCCATTTATAGCACCATCGGCACTATCGC
ACCGTTGGAAGAGATGGTTTCCATCAGTAGAGAACTTGGCTGTGCGATCTTAGTTGATGAGTCACACTCTCTGGGCACCC
ATGGTTACCATGGTGCGGGTTTAGTGAATAAGCTTGGCTTAACAAAACAGGTCGACTTCCTAACGGCGAGCCTCGCTAAA
ACATTTGCCTACCGCGCAGGAGCGATTTGGTGTAACAACCTTGCTAATGAGTGTATTCCATTTGTCGCCTATCCGGCTAT
TTTCAGCTCGGCAATGTTGCCGTATGAAATTGACCGCATCAGCGCAACGTTGGAAATCATTTTGAAAGCGGATAAGGAAA
GAGAGGTGCTCGCAGAAAAAGCCAACGCTTTGGCTAAAACCCTGCGCTCAATTGGTTTCACAATTCGCAGTGAATCACAA
ATCATTGCATTGGAAACAGGGGATGAAAGAAACACAGAAAAGGTTAGAGACTACTTAGAAAGCCATGGCGTATTTGGCGC
TGTCTTCTGCCGGCCAGCAACTACTCCAAATAAGAACATCATCCGGTTTTCTCTAAATAGCTCTGTTACCGACGCGCAAC
TAGAAAAGCTGATACAGGTATGCCATGACGCCTACCACCAGCCAAACATCTATTTTCTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

66.753

97.964

0.654

Multiple sequence alignment