Detailed information NTG1024052

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB2S62_RS12540
• Genome accession: NZ_CP162100
• Coordinates: 2797669..2798658 (-)
• Length: 329 a.a.
• NCBI ID: WP_367987334.1
• Uniprot ID: -
• Organism: Vibrio sp. NTOU-M3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2792669..2803658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB2S62_RS12515 (AB2S62_12275)	rimM	2792777..2793325 (-)	549	WP_367987330.1	ribosome maturation factor RimM	-
AB2S62_RS12520 (AB2S62_12280)	rpsP	2793355..2793603 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
AB2S62_RS12525 (AB2S62_12285)	ffh	2793883..2795259 (-)	1377	WP_367987331.1	signal recognition particle protein	-
AB2S62_RS12530 (AB2S62_12290)	-	2795440..2796234 (+)	795	WP_367987332.1	inner membrane protein YpjD	-
AB2S62_RS12535 (AB2S62_12295)	-	2796348..2797619 (+)	1272	WP_367987333.1	HlyC/CorC family transporter	-
AB2S62_RS12540 (AB2S62_12300)	rpoS	2797669..2798658 (-)	990	WP_367987334.1	RNA polymerase sigma factor RpoS	Regulator
AB2S62_RS12545 (AB2S62_12305)	nlpD	2798734..2799654 (-)	921	WP_367987335.1	murein hydrolase activator NlpD	-
AB2S62_RS12550 (AB2S62_12310)	-	2799658..2800284 (-)	627	WP_367987336.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AB2S62_RS12555 (AB2S62_12315)	surE	2800286..2801044 (-)	759	WP_367987337.1	5'/3'-nucleotidase SurE	-
AB2S62_RS12560 (AB2S62_12320)	truD	2801046..2802089 (-)	1044	WP_367987338.1	tRNA pseudouridine(13) synthase TruD	-
AB2S62_RS12565 (AB2S62_12325)	ispF	2802106..2802594 (-)	489	WP_367987339.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB2S62_RS12570 (AB2S62_12330)	ispD	2802591..2803301 (-)	711	WP_367987340.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB2S62_RS12575 (AB2S62_12335)	ftsB	2803302..2803583 (-)	282	WP_367987341.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37611.49 Da
• Isoelectric Point: 4.6370

>NTDB_id=1024052 AB2S62_RS12540 WP_367987334.1 2797669..2798658(-) (rpoS) [Vibrio sp. NTOU-M3]
MSISNTATKVEEFDIDQQTMESFSAGNGSSVEESVQTSTNKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIANQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDAKYS
DPEVSTQDDDIKDSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLSM
ENLFSIEDD

Nucleotide

• Length: 990 bp

>NTDB_id=1024052 AB2S62_RS12540 WP_367987334.1 2797669..2798658(-) (rpoS) [Vibrio sp. NTOU-M3]
ATGAGTATCAGCAATACAGCAACTAAAGTCGAAGAGTTCGATATCGATCAGCAAACAATGGAATCGTTTTCTGCCGGTAA
CGGATCGTCTGTTGAAGAAAGTGTTCAAACATCTACAAACAAAGAAGAGTTCGAGGTTTCCGCAAAAAGCTTGGATGCCA
CTCAACTCTACCTCGGTGAAATCGGTTTTTCTCCTTTATTAACAGCTGAAGAAGAAGTGCTTTATGCACGCCGCGCGTTG
CGTGGTGATGAAGCTGCGCGTAAAAGAATGATTGAGAGTAACTTACGTCTGGTTGTTAAAATATCACGCCGTTATAGCAA
TCGTGGCCTTGCACTGCTTGATTTAATCGAAGAAGGCAACTTAGGTTTGATTCGTGCGGTTGAGAAGTTTGACCCTGAGC
GCGGTTTCCGTTTCTCTACGTATGCCACGTGGTGGATTCGTCAAACAATAGAGCGTGCTTTGATGAATCAGACTCGCACC
ATCCGCTTGCCAATTCATGTTGTAAAAGAGCTCAATATTTATTTGCGTACGGCACGTGAATTATCTCAAAAGCTCGATCA
TGAACCGACGGCAGAAGAAATCGCCAATCAATTAGATAAACCCGTTGATGATGTCAGTAAGATGCTGCGCCTGAATGAGC
GTATCAGCTCCGTTGATACACCGATTGGTGGTGATGGTGAAAAAGCGTTGCTGGATATCATTCCTGATGCGAAATATTCT
GATCCAGAAGTATCGACGCAAGATGATGATATTAAAGACTCATTGATTCATTGGTTAGATGAACTCAATCCTAAGCAGAA
AGAGGTGTTAGCTCGTCGTTTTGGATTGTTAGGCTATGAGCCATCGACACTTGAAGAAGTGGGTCGAGAGATCAACCTGA
CGCGTGAGCGCGTTCGTCAAATCCAAGTTGAAGGACTTAGAAGGTTACGTGAGATCTTGATCAAGCAAGGCCTAAGTATG
GAAAACTTGTTTAGTATTGAAGATGACTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.635	100	0.839