Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AB2S62_RS02410 Genome accession   NZ_CP162100
Coordinates   498397..498915 (+) Length   172 a.a.
NCBI ID   WP_367988131.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 493397..503915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS02400 (AB2S62_02160) gshA 496198..497766 (+) 1569 WP_367988129.1 glutamate--cysteine ligase -
  AB2S62_RS02405 (AB2S62_02165) - 497774..498379 (+) 606 WP_367988130.1 hypothetical protein -
  AB2S62_RS02410 (AB2S62_02170) luxS 498397..498915 (+) 519 WP_367988131.1 S-ribosylhomocysteine lyase Regulator
  AB2S62_RS02415 (AB2S62_02175) - 498959..499435 (-) 477 WP_367988132.1 RDD family protein -
  AB2S62_RS02425 (AB2S62_02185) - 500145..500447 (+) 303 WP_367988133.1 PTS sugar transporter subunit IIB -
  AB2S62_RS02430 (AB2S62_02190) - 500537..501859 (+) 1323 WP_367988134.1 PTS sugar transporter subunit IIC -
  AB2S62_RS02435 (AB2S62_02195) - 501892..502200 (+) 309 WP_367988135.1 PTS lactose/cellobiose transporter subunit IIA -
  AB2S62_RS02440 (AB2S62_02200) - 502207..503532 (+) 1326 WP_367988136.1 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19001.86 Da        Isoelectric Point: 4.8520

>NTDB_id=1024033 AB2S62_RS02410 WP_367988131.1 498397..498915(+) (luxS) [Vibrio sp. NTOU-M3]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTQPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQKVAEAWLAAMQDVLKVEAQNKIPELNEYQCGTAAMHSLEEAKAIATAIIDAGILVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1024033 AB2S62_RS02410 WP_367988131.1 498397..498915(+) (luxS) [Vibrio sp. NTOU-M3]
ATGCCATTACTTGATAGTTTTACCGTTGACCACACACGAATGAATGCACCCGCAGTTCGTGTAGCAAAGACCATGACCAC
GCCAAAAGGCGATACCATAACGGTATTTGATTTACGTTTTACTCAGCCAAATAAAGACATCCTTTCTGAAAAAGGCATTC
ATACGCTTGAGCACCTTTATGCTGGCTTTATGCGTAATCACTTAAATGGGGACTCAGTAGAGATCATCGATATTTCACCT
ATGGGGTGTCGTACTGGGTTCTACATGAGTTTGATTGGTACGCCTTCAGAGCAAAAGGTTGCTGAAGCGTGGCTTGCGGC
AATGCAAGACGTACTGAAAGTTGAAGCTCAGAACAAGATCCCTGAATTGAATGAGTATCAGTGCGGTACAGCAGCAATGC
ACTCATTAGAAGAAGCGAAAGCGATTGCAACGGCCATTATTGATGCCGGAATTTTAGTGAATAAAAATGACGAGTTGGCA
CTGCCGGAGTCAATGCTAAAAGAGCTGCGTGTAGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment