Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB2S62_RS01165 Genome accession   NZ_CP162100
Coordinates   235966..236973 (+) Length   335 a.a.
NCBI ID   WP_367987910.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 230966..241973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS01145 (AB2S62_00905) metJ 231069..231389 (+) 321 WP_004415993.1 met regulon transcriptional regulator MetJ -
  AB2S62_RS01150 (AB2S62_00910) - 231491..232751 (-) 1261 Protein_217 malic enzyme-like NAD(P)-binding protein -
  AB2S62_RS01155 (AB2S62_00915) rpmE 232991..233209 (-) 219 WP_367987908.1 50S ribosomal protein L31 -
  AB2S62_RS01160 (AB2S62_00920) priA 233481..235682 (+) 2202 WP_367987909.1 primosomal protein N' -
  AB2S62_RS01165 (AB2S62_00925) cytR 235966..236973 (+) 1008 WP_367987910.1 DNA-binding transcriptional regulator CytR Regulator
  AB2S62_RS01170 (AB2S62_00930) ftsN 237086..237634 (+) 549 WP_367987911.1 cell division protein FtsN -
  AB2S62_RS01175 (AB2S62_00935) hslV 237801..238343 (+) 543 WP_004415984.1 ATP-dependent protease subunit HslV -
  AB2S62_RS01180 (AB2S62_00940) hslU 238395..239729 (+) 1335 WP_367987912.1 HslU--HslV peptidase ATPase subunit -
  AB2S62_RS01185 (AB2S62_00945) - 239719..239856 (-) 138 WP_367987913.1 hypothetical protein -
  AB2S62_RS01190 (AB2S62_00950) - 240014..241612 (+) 1599 WP_367987914.1 BCCT family transporter -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36930.48 Da        Isoelectric Point: 6.4949

>NTDB_id=1024022 AB2S62_RS01165 WP_367987910.1 235966..236973(+) (cytR) [Vibrio sp. NTOU-M3]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQSDGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRVAQLSGPESAVLCQFRHQGYQQALRRAGITMNPTYCTYGNFSFEDGAKAVRHLLALPEPPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSVVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TSLVVRESAAPPRVI

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1024022 AB2S62_RS01165 WP_367987910.1 235966..236973(+) (cytR) [Vibrio sp. NTOU-M3]
ATGGCGACAATGAAGGATGTTGCCCAGCTCGCAGGAGTCTCAACAGCGACAGTATCTAGAGCGCTGATGAATCCGGAAAA
AGTCTCTTCTGCTACCAGAAAGCGAGTAGAAGATGCTGTGTTAGAAGCTGGCTATTCACCAAACTCTTTGGCGCGTAACT
TGCGCCGGAATGAATCAAAAACGATCATCGCTATCATTCCTGATATTTGTGATCCTTATTACACGGAAATTATTCGCGGT
ATTGAAGATGCTGCCATGGAACACGGCTACATTGTGTTACTTGGTGATAGCGGTCAGCAAAAAAAGCGAGAAAGTTCATT
TGTGAACCTCGTCTTTACCAAACAATCTGATGGCATGCTGCTACTGGGAACCGATCTACCTTTTGATGTCAGCAAACCAG
AGCAAAAGAACCTGCCACCAATGGTGATGGCGTGTGAGTTTGCCCCTGAACTGGAGCTGCCTACCGTCCATATTGATAAT
CTCACATCAGCATTTGAAGCGGTCAATTACTTAACTCAACTTGGCCACAAACGTGTGGCTCAGCTTTCTGGGCCTGAGTC
AGCGGTACTATGCCAATTCCGTCATCAGGGATACCAGCAGGCGCTGCGCCGCGCTGGTATTACCATGAATCCAACGTACT
GCACGTACGGTAACTTCTCTTTTGAAGACGGTGCCAAAGCGGTGCGTCACTTGTTAGCTTTACCAGAGCCGCCAACGGCT
ATTTTCTGTCACAATGACGCGATGGCCATTGGTGCGATTCAAGAAGCGAAGAAGTTAGGATTGCGCGTGCCTCAAGATCT
TTCAGTGGTGGGCTTTGATGATATTCATTTTGCGCAATATTGCGATCCACCGCTAACCACTATTTCCCAACCTCGTTATG
AAATTGGCCGTCAGGCGATGCTGATGATGTTGGAGCTTTTACGTGGTCATGATGTTCGTGCTGGCTCTCGTTTGCTCGAA
ACCAGTTTAGTGGTGCGCGAAAGTGCAGCACCTCCTCGTGTGATTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.47

99.104

0.916
  cytR Vibrio parahaemolyticus RIMD 2210633

89.189

99.403

0.887

Multiple sequence alignment