Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB3G27_RS11555 Genome accession   NZ_CP162095
Coordinates   2291155..2291925 (-) Length   256 a.a.
NCBI ID   WP_050943744.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2286155..2296925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS11535 (AB3G27_11535) - 2286248..2287069 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  AB3G27_RS11540 (AB3G27_11540) - 2287095..2287733 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  AB3G27_RS11545 (AB3G27_11545) glyS 2287900..2289945 (-) 2046 WP_137054962.1 glycine--tRNA ligase subunit beta -
  AB3G27_RS11550 (AB3G27_11550) glyQ 2289938..2290825 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  AB3G27_RS11555 (AB3G27_11555) recO 2291155..2291925 (-) 771 WP_050943744.1 DNA repair protein RecO Machinery gene
  AB3G27_RS11560 (AB3G27_11560) - 2291961..2292104 (-) 144 WP_003217288.1 YqzL family protein -
  AB3G27_RS11565 (AB3G27_11565) era 2292253..2293158 (-) 906 WP_003217394.1 GTPase Era -
  AB3G27_RS11570 (AB3G27_11570) - 2293151..2293549 (-) 399 WP_003217296.1 cytidine deaminase -
  AB3G27_RS11575 (AB3G27_11575) - 2293663..2294049 (-) 387 WP_003217363.1 diacylglycerol kinase family protein -
  AB3G27_RS11580 (AB3G27_11580) ybeY 2294027..2294506 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  AB3G27_RS11585 (AB3G27_11585) - 2294507..2296594 (-) 2088 WP_050943969.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29272.98 Da        Isoelectric Point: 8.7151

>NTDB_id=1023995 AB3G27_RS11555 WP_050943744.1 2291155..2291925(-) (recO) [Bacillus pumilus strain LBUM494]
MLIKSEGIVLRTTDYGETNKIVTLITREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICRNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1023995 AB3G27_RS11555 WP_050943744.1 2291155..2291925(-) (recO) [Bacillus pumilus strain LBUM494]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGATCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAAGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCGAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment