Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB3G27_RS07830 Genome accession   NZ_CP162095
Coordinates   1574846..1575748 (+) Length   300 a.a.
NCBI ID   WP_050945050.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1569846..1580748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS07810 (AB3G27_07810) - 1570512..1572248 (+) 1737 WP_050945051.1 hypothetical protein -
  AB3G27_RS07815 (AB3G27_07815) - 1572245..1572520 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  AB3G27_RS07820 (AB3G27_07820) sucC 1572697..1573857 (+) 1161 WP_003211841.1 ADP-forming succinate--CoA ligase subunit beta -
  AB3G27_RS07825 (AB3G27_07825) sucD 1573880..1574782 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  AB3G27_RS07830 (AB3G27_07830) dprA 1574846..1575748 (+) 903 WP_050945050.1 DNA-processing protein DprA Machinery gene
  AB3G27_RS07835 (AB3G27_07835) topA 1575942..1578017 (+) 2076 WP_003212237.1 type I DNA topoisomerase -
  AB3G27_RS07840 (AB3G27_07840) trmFO 1578088..1579392 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB3G27_RS07845 (AB3G27_07845) xerC 1579455..1580372 (+) 918 WP_003211704.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34106.43 Da        Isoelectric Point: 8.5961

>NTDB_id=1023984 AB3G27_RS07830 WP_050945050.1 1574846..1575748(+) (dprA) [Bacillus pumilus strain LBUM494]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEEWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1023984 AB3G27_RS07830 WP_050945050.1 1574846..1575748(+) (dprA) [Bacillus pumilus strain LBUM494]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGAGTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCTGAGCATCCGCCTTACGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCCTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

39.236

96

0.377

Multiple sequence alignment