Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB3G27_RS06895 Genome accession   NZ_CP162095
Coordinates   1392100..1392681 (+) Length   193 a.a.
NCBI ID   WP_003210851.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387100..1397681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS06865 (AB3G27_06865) dapD 1387222..1387932 (+) 711 WP_003212204.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AB3G27_RS06870 (AB3G27_06870) - 1387967..1389145 (+) 1179 WP_050782659.1 N-acetyldiaminopimelate deacetylase -
  AB3G27_RS06875 (AB3G27_06875) - 1389196..1389438 (+) 243 WP_003211408.1 YkuS family protein -
  AB3G27_RS06880 (AB3G27_06880) - 1389468..1390274 (-) 807 WP_137054698.1 mechanosensitive ion channel family protein -
  AB3G27_RS06885 (AB3G27_06885) ahpA 1390546..1391088 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  AB3G27_RS06890 (AB3G27_06890) - 1391171..1391629 (+) 459 WP_003211884.1 TlpA disulfide reductase family protein -
  AB3G27_RS06895 (AB3G27_06895) rok 1392100..1392681 (+) 582 WP_003210851.1 transcriptional regulator Rok Regulator
  AB3G27_RS06900 (AB3G27_06900) - 1392734..1393651 (-) 918 WP_050945137.1 hypothetical protein -
  AB3G27_RS06905 (AB3G27_06905) - 1393736..1394317 (+) 582 WP_253622656.1 molybdenum cofactor guanylyltransferase -
  AB3G27_RS06910 (AB3G27_06910) - 1394348..1395364 (+) 1017 WP_253622655.1 thiazole biosynthesis adenylyltransferase ThiF -
  AB3G27_RS06915 (AB3G27_06915) glp 1395374..1396651 (+) 1278 WP_253622654.1 gephyrin-like molybdotransferase Glp -
  AB3G27_RS06920 (AB3G27_06920) mobB 1396633..1397157 (+) 525 WP_003211651.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AB3G27_RS06925 (AB3G27_06925) - 1397154..1397645 (+) 492 WP_253622653.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21839.83 Da        Isoelectric Point: 9.7310

>NTDB_id=1023982 AB3G27_RS06895 WP_003210851.1 1392100..1392681(+) (rok) [Bacillus pumilus strain LBUM494]
MFNEREALRLRLEQLNEAEVKVIREYQIERDTIYAKLRELDRHGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNAVSTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1023982 AB3G27_RS06895 WP_003210851.1 1392100..1392681(+) (rok) [Bacillus pumilus strain LBUM494]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATACGATTTATGCAAAATTAAGAGAATTAGACCGTCATGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATGCTGTATCAACTTTAGGAACAGGACAGCTAAACGGTGCTCCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment