Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   AB3G27_RS05580 Genome accession   NZ_CP162095
Coordinates   1156054..1156251 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151054..1161251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS05550 (AB3G27_05550) - 1151461..1151640 (+) 180 WP_003211282.1 YjzC family protein -
  AB3G27_RS05555 (AB3G27_05555) - 1151811..1153076 (+) 1266 WP_253622731.1 MFS transporter -
  AB3G27_RS05560 (AB3G27_05560) - 1153193..1153387 (-) 195 WP_003211779.1 YjzD family protein -
  AB3G27_RS05565 (AB3G27_05565) - 1153599..1154339 (+) 741 WP_050945303.1 hypothetical protein -
  AB3G27_RS05570 (AB3G27_05570) - 1154415..1154990 (+) 576 WP_268458875.1 nad binding enzyme -
  AB3G27_RS05575 (AB3G27_05575) med 1155081..1156043 (+) 963 WP_050945301.1 BMP family ABC transporter substrate-binding protein Regulator
  AB3G27_RS05580 (AB3G27_05580) comZ 1156054..1156251 (+) 198 WP_003211983.1 ComZ family protein Regulator
  AB3G27_RS05585 (AB3G27_05585) - 1156262..1156495 (-) 234 WP_212046074.1 hypothetical protein -
  AB3G27_RS05590 (AB3G27_05590) - 1156665..1157603 (+) 939 WP_003212296.1 beta-ketoacyl-ACP synthase III -
  AB3G27_RS05595 (AB3G27_05595) fabF 1157625..1158866 (+) 1242 WP_003211631.1 beta-ketoacyl-ACP synthase II -
  AB3G27_RS05600 (AB3G27_05600) - 1158944..1159738 (+) 795 WP_050945299.1 DUF2268 domain-containing protein -
  AB3G27_RS05605 (AB3G27_05605) - 1159909..1160889 (+) 981 WP_368198206.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=1023974 AB3G27_RS05580 WP_003211983.1 1156054..1156251(+) (comZ) [Bacillus pumilus strain LBUM494]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=1023974 AB3G27_RS05580 WP_003211983.1 1156054..1156251(+) (comZ) [Bacillus pumilus strain LBUM494]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
AGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTTATGCAAGAGGCATATGAGCTTG
GAAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677

Multiple sequence alignment