Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AB3G27_RS04210 Genome accession   NZ_CP162095
Coordinates   887673..888464 (+) Length   263 a.a.
NCBI ID   WP_050944745.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 882673..893464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS04175 (AB3G27_04175) - 882756..883304 (+) 549 WP_050944750.1 thioredoxin family protein -
  AB3G27_RS04180 (AB3G27_04180) - 883641..884108 (+) 468 WP_050944749.1 thiol-disulfide oxidoreductase DCC family protein -
  AB3G27_RS04185 (AB3G27_04185) - 884145..885401 (-) 1257 WP_050944748.1 transcriptional regulator -
  AB3G27_RS04190 (AB3G27_04190) - 885674..886261 (+) 588 WP_050944747.1 nitroreductase -
  AB3G27_RS04195 (AB3G27_04195) - 886302..886457 (-) 156 WP_003217852.1 YfhD family protein -
  AB3G27_RS04200 (AB3G27_04200) - 886519..886629 (-) 111 WP_017358836.1 YfhE family protein -
  AB3G27_RS04205 (AB3G27_04205) - 886682..887578 (-) 897 WP_268459459.1 TIGR01777 family oxidoreductase -
  AB3G27_RS04210 (AB3G27_04210) recX 887673..888464 (+) 792 WP_050944745.1 recombination regulator RecX Regulator
  AB3G27_RS04215 (AB3G27_04215) - 888468..888782 (+) 315 WP_106033150.1 YfhH family protein -
  AB3G27_RS04220 (AB3G27_04220) - 888805..888978 (-) 174 WP_003217811.1 YpzG family protein -
  AB3G27_RS04225 (AB3G27_04225) - 889004..889153 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  AB3G27_RS04230 (AB3G27_04230) - 889270..889542 (+) 273 WP_003217809.1 YfhJ family protein -
  AB3G27_RS04235 (AB3G27_04235) - 889832..890815 (+) 984 WP_003217835.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30579.97 Da        Isoelectric Point: 6.8960

>NTDB_id=1023966 AB3G27_RS04210 WP_050944745.1 887673..888464(+) (recX) [Bacillus pumilus strain LBUM494]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKQYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDNIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1023966 AB3G27_RS04210 WP_050944745.1 887673..888464(+) (recX) [Bacillus pumilus strain LBUM494]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATTTTTCTAGATGAAAAATACGCCTT
TAGCGTGGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCCGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTA
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCAATACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTCAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGGATAGATGATGACAACATTGAACAAGCACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAACGAAAAGGATTTTCGTTTGGGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.738

100

0.627

Multiple sequence alignment