Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB3G27_RS01950 Genome accession   NZ_CP162095
Coordinates   362042..362470 (-) Length   142 a.a.
NCBI ID   WP_003214307.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357042..367470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS01920 (AB3G27_01920) - 357198..357521 (+) 324 WP_106029719.1 YckD family protein -
  AB3G27_RS01925 (AB3G27_01925) - 357577..358341 (-) 765 WP_268459595.1 MBL fold metallo-hydrolase -
  AB3G27_RS01930 (AB3G27_01930) - 358457..358873 (+) 417 WP_003214483.1 Lrp/AsnC family transcriptional regulator -
  AB3G27_RS01935 (AB3G27_01935) - 358903..359709 (+) 807 WP_050943235.1 aminoglycoside N(3)-acetyltransferase -
  AB3G27_RS01940 (AB3G27_01940) - 359711..360097 (-) 387 WP_050943233.1 competence protein ComJ -
  AB3G27_RS01945 (AB3G27_01945) - 360218..361915 (-) 1698 WP_050943231.1 methyl-accepting chemotaxis protein -
  AB3G27_RS01950 (AB3G27_01950) nucA/comI 362042..362470 (-) 429 WP_003214307.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB3G27_RS01955 (AB3G27_01955) - 362838..364907 (+) 2070 WP_050943229.1 hydantoinase/oxoprolinase family protein -
  AB3G27_RS01960 (AB3G27_01960) - 364897..366882 (+) 1986 WP_050943227.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15914.84 Da        Isoelectric Point: 5.5536

>NTDB_id=1023964 AB3G27_RS01950 WP_003214307.1 362042..362470(-) (nucA/comI) [Bacillus pumilus strain LBUM494]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSERYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1023964 AB3G27_RS01950 WP_003214307.1 362042..362470(-) (nucA/comI) [Bacillus pumilus strain LBUM494]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAGACCATTCACTTCCCATCAGAACGTTACCCTGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGGCATTCATCCGTATGCACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAGTCCTTCAGATAATAGAGGAGCCGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment