Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB3G27_RS00255 Genome accession   NZ_CP162095
Coordinates   47053..47343 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42053..52343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS00215 (AB3G27_00215) - 42087..42416 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  AB3G27_RS00220 (AB3G27_00220) - 42429..42869 (+) 441 WP_003217911.1 YaaR family protein -
  AB3G27_RS00225 (AB3G27_00225) holB 42881..43870 (+) 990 WP_050945801.1 DNA polymerase III subunit delta' -
  AB3G27_RS00230 (AB3G27_00230) - 43873..44700 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  AB3G27_RS00235 (AB3G27_00235) yabA 44715..45068 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  AB3G27_RS00240 (AB3G27_00240) - 45124..45867 (+) 744 WP_268459713.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AB3G27_RS00245 (AB3G27_00245) - 45854..46150 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  AB3G27_RS00250 (AB3G27_00250) rsmI 46128..47006 (+) 879 WP_284907845.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB3G27_RS00255 (AB3G27_00255) abrB 47053..47343 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB3G27_RS00260 (AB3G27_00260) metG 47864..49855 (+) 1992 WP_368197511.1 methionine--tRNA ligase -
  AB3G27_RS00265 (AB3G27_00265) - 49937..50704 (+) 768 WP_340901032.1 TatD family hydrolase -
  AB3G27_RS00270 (AB3G27_00270) - 50949..52151 (+) 1203 WP_050945796.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=1023961 AB3G27_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain LBUM494]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1023961 AB3G27_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain LBUM494]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATTCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment