Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ99_RS14955 Genome accession   NZ_AP027764
Coordinates   3098950..3099579 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2017-02-2CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3093950..3104579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ99_RS14940 (VEE76_28520) helD 3094192..3096246 (-) 2055 WP_039020487.1 DNA helicase IV -
  AABJ99_RS14945 (VEE76_28530) yccF 3096369..3096815 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABJ99_RS14950 (VEE76_28540) yccS 3096825..3098987 (+) 2163 WP_000875038.1 YccS family putative transporter -
  AABJ99_RS14955 (VEE76_28550) sxy/tfoX 3098950..3099579 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ99_RS14960 (VEE76_28560) sulA 3099798..3100307 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABJ99_RS14965 (VEE76_28580) ompA 3100664..3101716 (+) 1053 WP_039020485.1 porin OmpA -
  AABJ99_RS14970 (VEE76_28590) matP 3101793..3102245 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABJ99_RS14975 (VEE76_28600) ycbZ 3102431..3104191 (+) 1761 WP_039020484.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=102379 AABJ99_RS14955 WP_000839153.1 3098950..3099579(-) (sxy/tfoX) [Escherichia coli strain 2017-02-2CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102379 AABJ99_RS14955 WP_000839153.1 3098950..3099579(-) (sxy/tfoX) [Escherichia coli strain 2017-02-2CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTGTGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATACTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment