Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB1X96_RS16415 Genome accession   NZ_CP162042
Coordinates   3045647..3046276 (-) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Shigella flexneri strain 603020     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3040647..3051276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1X96_RS16400 (AB1X96_16390) helD 3040883..3042943 (-) 2061 WP_005113920.1 DNA helicase IV -
  AB1X96_RS16405 (AB1X96_16395) - 3043066..3043512 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AB1X96_RS16410 (AB1X96_16400) yccS 3043522..3045684 (+) 2163 WP_000875021.1 YccS family putative transporter -
  AB1X96_RS16415 (AB1X96_16405) sxy/tfoX 3045647..3046276 (-) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB1X96_RS16420 (AB1X96_16410) sulA 3046495..3047004 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB1X96_RS16425 (AB1X96_16415) ompA 3047361..3048401 (+) 1041 WP_000750416.1 porin OmpA -
  AB1X96_RS16430 (AB1X96_16420) matP 3048477..3048929 (-) 453 WP_000877160.1 macrodomain Ter protein MatP -
  AB1X96_RS16435 (AB1X96_16425) - 3049115..3050875 (+) 1761 WP_000156535.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=1023782 AB1X96_RS16415 WP_000839131.1 3045647..3046276(-) (sxy/tfoX) [Shigella flexneri strain 603020]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1023782 AB1X96_RS16415 WP_000839131.1 3045647..3046276(-) (sxy/tfoX) [Shigella flexneri strain 603020]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTTAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment