Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB2B46_RS14540 Genome accession   NZ_CP162029
Coordinates   3055660..3056268 (-) Length   202 a.a.
NCBI ID   WP_062777498.1    Uniprot ID   -
Organism   Kluyvera intermedia strain L-40-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3050660..3061268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2B46_RS14525 (AB2B46_14525) helD 3050881..3052935 (-) 2055 WP_368287477.1 DNA helicase IV -
  AB2B46_RS14530 (AB2B46_14530) - 3053058..3053504 (+) 447 WP_062777495.1 YccF domain-containing protein -
  AB2B46_RS14535 (AB2B46_14535) yccS 3053524..3055650 (+) 2127 WP_368287479.1 YccS family putative transporter -
  AB2B46_RS14540 (AB2B46_14540) sxy/tfoX 3055660..3056268 (-) 609 WP_062777498.1 TfoX/Sxy family DNA transformation protein Regulator
  AB2B46_RS14545 (AB2B46_14545) sulA 3056487..3056996 (+) 510 WP_153744059.1 SOS-induced cell division inhibitor SulA -
  AB2B46_RS14550 (AB2B46_14550) ompA 3057351..3058406 (+) 1056 WP_062777502.1 porin OmpA -
  AB2B46_RS14555 (AB2B46_14555) matP 3058494..3058949 (-) 456 WP_062777504.1 macrodomain Ter protein MatP -
  AB2B46_RS14560 (AB2B46_14560) - 3059134..3060894 (+) 1761 WP_368287480.1 AAA family ATPase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23331.25 Da        Isoelectric Point: 10.4580

>NTDB_id=1023713 AB2B46_RS14540 WP_062777498.1 3055660..3056268(-) (sxy/tfoX) [Kluyvera intermedia strain L-40-1]
MKVISYKRIYQSQEYFAVLGKVRSRALFGGYSLAVDDTVFAMVAEGELYLRMCEKTAIYQTQHSPPLLMLRKRGSSLQLK
YFKVDDALWANKPVLLQLGLFSLEDARREKSHQKHPQRLKDLPNLSFHMELLLHEAGIKDVRALQQMGAKTVWLLLRQKR
KQISSNVIYSLEGAIQGVHAAALPALKRQELEEWVRNRTHKN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1023713 AB2B46_RS14540 WP_062777498.1 3055660..3056268(-) (sxy/tfoX) [Kluyvera intermedia strain L-40-1]
ATGAAGGTAATATCATATAAACGGATTTATCAATCCCAGGAATATTTTGCGGTGTTAGGAAAAGTCAGGTCACGAGCGCT
GTTTGGTGGTTACAGCCTTGCCGTTGACGACACGGTTTTCGCAATGGTTGCGGAGGGGGAGCTGTATTTGAGGATGTGCG
AAAAAACCGCCATTTATCAGACTCAGCACTCGCCGCCATTATTGATGTTACGTAAACGAGGAAGCTCGCTTCAGCTTAAG
TATTTCAAAGTAGATGATGCTCTCTGGGCCAACAAACCTGTTTTATTGCAACTGGGGCTGTTTTCACTAGAGGATGCGCG
ACGTGAAAAGTCCCATCAAAAGCATCCGCAGCGATTAAAAGATTTACCCAATCTCTCTTTTCATATGGAATTGCTGTTGC
ATGAAGCGGGTATTAAGGATGTCCGGGCGTTGCAACAAATGGGGGCGAAAACGGTGTGGTTGCTTCTTCGTCAAAAACGT
AAACAGATAAGTTCCAATGTCATTTACTCATTGGAGGGAGCCATTCAGGGTGTGCATGCTGCTGCACTCCCGGCGCTAAA
GCGTCAGGAGCTGGAAGAGTGGGTGCGCAATCGCACCCACAAGAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.726

99.505

0.545

Multiple sequence alignment