Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB2J53_RS19050 Genome accession   NZ_CP162020
Coordinates   3748137..3749819 (-) Length   560 a.a.
NCBI ID   WP_368297178.1    Uniprot ID   -
Organism   Cytobacillus firmus strain A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3743137..3754819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2J53_RS19030 (AB2J53_19030) - 3744887..3745123 (+) 237 WP_048008222.1 DUF2627 domain-containing protein -
  AB2J53_RS19035 (AB2J53_19035) - 3745141..3745281 (+) 141 WP_082138922.1 YycC family protein -
  AB2J53_RS19040 (AB2J53_19040) spo0A 3745564..3746352 (-) 789 WP_048008223.1 sporulation transcription factor Spo0A -
  AB2J53_RS19045 (AB2J53_19045) spoIVB 3746665..3747954 (-) 1290 WP_163143354.1 SpoIVB peptidase -
  AB2J53_RS19050 (AB2J53_19050) recN 3748137..3749819 (-) 1683 WP_368297178.1 DNA repair protein RecN Machinery gene
  AB2J53_RS19055 (AB2J53_19055) argR 3749905..3750354 (-) 450 WP_009332889.1 transcriptional regulator ArgR -
  AB2J53_RS19060 (AB2J53_19060) - 3750527..3751372 (-) 846 WP_368297180.1 TlyA family RNA methyltransferase -
  AB2J53_RS19065 (AB2J53_19065) dxs 3751376..3753268 (-) 1893 WP_159344688.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB2J53_RS19070 (AB2J53_19070) - 3753637..3754530 (-) 894 WP_368297181.1 polyprenyl synthetase family protein -
  AB2J53_RS19075 (AB2J53_19075) xseB 3754533..3754766 (-) 234 WP_048008230.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63245.28 Da        Isoelectric Point: 5.2235

>NTDB_id=1023627 AB2J53_RS19050 WP_368297178.1 3748137..3749819(-) (recN) [Cytobacillus firmus strain A4]
MLNEITIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKTELEGLFILDDPKHPCYKR
AAEFGIDIEDGMIVLRRDISKTGKSICRVNGKLVTISALREIGSSLIDIHGQHEHQELMNETLHLPLLDQFGGTKISASL
SEYQDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSVQSGYNALQG
EQKGLDWIGLVMGYMNDAAELDPSYKEIAENVANSFYLLEDAASSLRNEMDFMEYDPQRLNEIENRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVTALKKDLVVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVLLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAIADTHLFIAKNTNEGRTKTTVKPLNEEEKIKEISRMISGVEITDLTKEHAKELLHMAKQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=1023627 AB2J53_RS19050 WP_368297178.1 3748137..3749819(-) (recN) [Cytobacillus firmus strain A4]
TTGTTAAATGAAATAACGATACGAAATTTTGCTATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCAGGGAAATCCATTATTATTGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAGT
TTGTCCGGCATGGTGAAGATAAAACTGAGTTAGAGGGGCTTTTTATCCTGGATGATCCTAAGCACCCTTGCTATAAACGA
GCTGCAGAATTTGGGATAGATATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCATTTG
CAGAGTGAATGGAAAACTGGTCACTATTTCTGCTTTGAGGGAAATCGGAAGTTCACTTATTGATATACACGGTCAGCACG
AACATCAGGAATTAATGAATGAAACCTTGCATCTTCCTCTTCTCGATCAGTTTGGAGGAACGAAGATTTCTGCTTCCCTT
TCTGAATATCAGGATATCTACAGATTATATGAAAGCACCTTGAAAAAGCTTAAGAATTTAAGCGAGAATGAACAGCAAAT
GGCACACCGGCTTGATTTAATCCAATTTCAGCTTGATGAAATCCAGTCAGCACAGCTGAAATTGAATGAAGATGAGGATC
TGATTGAAGAAAAGAGAAAGCTATCCAATTTTGAACGTATTTTTGACTCAGTTCAGTCTGGCTATAATGCTCTTCAAGGA
GAGCAAAAAGGGCTCGATTGGATTGGGCTGGTTATGGGGTATATGAATGATGCCGCGGAATTGGACCCATCGTATAAAGA
AATAGCGGAAAATGTGGCAAACAGCTTCTATTTGCTTGAAGATGCGGCCAGTTCCCTGCGCAATGAAATGGACTTTATGG
AATATGATCCCCAGAGGCTCAATGAAATCGAAAACAGACTGAATGAAATAAATGGTCTAAAAAGAAAATATGGAAAAACG
GTAGAAGAAGTGCTGGAATACGCAGCAAAAATAGAAGAAGAAATTGAAACCTTGCAAAATAAAGAAACCCATATTGATAA
GCTGCAAAAAGAAGTTACTGCCCTGAAAAAAGACCTTGTGGTTGAAGGGGAAGAACTGAGCAAGCTGCGGAGAAAATCTG
CCCTAAAGCTTACGAAGTTAATTCATAAAGAGCTTAAGGAATTATACATGGAAAAAACAGTTTTTGAGGTAAGATTCTTT
TCTGATCCCGAAGTCCTTCTGAAAAATGGCATTGACAGAGCGGAATTCTATATTTCCACCAATCCGGGAGAACCGCTCAA
GCCTCTGTCTAAGATTGCATCGGGAGGGGAATTATCCCGAATCATGCTTGCCTTGAAGAGTATTTTCTCAAAACATCAAG
GTGTTACAAGTATTATCTTCGATGAAGTGGATACAGGCGTGAGCGGAAGAGTGGCACAAGCTATCGCGGAAAAGATTCAT
CATGTTTCCGTGGATTCACAAGTGCTTTGCATCTCTCACCTGCCACAGGTTGCAGCGATTGCAGATACTCATTTATTTAT
TGCTAAAAACACGAATGAAGGACGGACCAAAACTACAGTGAAGCCTCTGAATGAAGAAGAGAAGATAAAAGAAATCAGCC
GTATGATTTCTGGTGTGGAAATTACCGATTTGACGAAAGAGCATGCAAAAGAGCTGCTGCATATGGCTAAACAGCTGAAA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.632

Multiple sequence alignment