Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB2J53_RS07260 Genome accession   NZ_CP162020
Coordinates   1380732..1382549 (+) Length   605 a.a.
NCBI ID   WP_250802026.1    Uniprot ID   -
Organism   Cytobacillus firmus strain A4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375732..1387549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2J53_RS07235 (AB2J53_07235) - 1376089..1376277 (-) 189 WP_048010953.1 hypothetical protein -
  AB2J53_RS07240 (AB2J53_07240) - 1376522..1377097 (+) 576 WP_368298342.1 GNAT family N-acetyltransferase -
  AB2J53_RS07245 (AB2J53_07245) spxA 1377573..1377968 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  AB2J53_RS07250 (AB2J53_07250) mecA 1378316..1378981 (+) 666 WP_048010951.1 adaptor protein MecA -
  AB2J53_RS07255 (AB2J53_07255) - 1379418..1380608 (+) 1191 WP_368298343.1 competence protein CoiA -
  AB2J53_RS07260 (AB2J53_07260) pepF 1380732..1382549 (+) 1818 WP_250802026.1 oligoendopeptidase F Regulator
  AB2J53_RS07265 (AB2J53_07265) - 1383067..1383936 (-) 870 WP_197217035.1 ClpXP adapter SpxH family protein -
  AB2J53_RS07270 (AB2J53_07270) - 1383939..1384343 (-) 405 WP_048010947.1 globin -
  AB2J53_RS07275 (AB2J53_07275) - 1384591..1385232 (-) 642 WP_197214652.1 lytic transglycosylase domain-containing protein -
  AB2J53_RS07280 (AB2J53_07280) - 1385265..1385855 (-) 591 WP_368298344.1 CYTH domain-containing protein -
  AB2J53_RS07285 (AB2J53_07285) - 1386054..1386431 (+) 378 WP_048010944.1 hypothetical protein -
  AB2J53_RS07290 (AB2J53_07290) - 1386551..1387189 (+) 639 WP_048010943.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69915.35 Da        Isoelectric Point: 4.9463

>NTDB_id=1023616 AB2J53_RS07260 WP_250802026.1 1380732..1382549(+) (pepF) [Cytobacillus firmus strain A4]
MANETTVKKLPARNEISPEDTWRLEDIFPSDDEWNKEYSEVQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDKIKNLYSEAASALAYIVPELLAEDEEKIAGYLKEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMENLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1023616 AB2J53_RS07260 WP_250802026.1 1380732..1382549(+) (pepF) [Cytobacillus firmus strain A4]
ATGGCTAATGAAACGACTGTAAAGAAACTGCCGGCAAGGAATGAGATTTCACCTGAAGATACGTGGCGTTTGGAGGATAT
TTTCCCTTCTGATGATGAGTGGAACAAGGAATACAGTGAAGTTCAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGCA
GGCTCGGAGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTCCAGGATCATTTACTTTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAATTCATTTTATCAGGGAATGGATGACAAAATTAAAAATTTGTA
TTCGGAAGCTGCTAGTGCACTTGCTTATATTGTTCCTGAGCTGCTTGCTGAAGATGAAGAGAAGATTGCAGGCTATTTGA
AGGAAAAAACCGAGCTGCAATTATATAAACATTCACTGGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAGGCTTCCGAGGTGCTTGGGGCTTCCAGTAATACATTTGGAATGCTGAATAATGCGGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTCGAAATTACTCACGGACGATTCATCCGTTTTCTTGAAAGTG
ACGAGCAGCGTGTCCGGCATGATGCTTTCAAAGCTGTATATGAGACTTATGGGAAGTTTCGCAATACATTTGCCAGCACT
CTAAGCGGAAACGTAAAAAAAGATAACTTCAACGCTAAGATCCGGAATTATGACTCCGCGCGCCATGCTGCCCTTTCTGC
GGACAATATTCCTGAAAGTGTTTATGAAAATCTGGTCAATACCATTAACGATAACCTGCATTTGCTGCATCGCTATGTCA
AACTCCGCAAGAAGGTTCTTGGGGTTAAGGAGCTTCATATGTACGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAGGCAAAAGACCTGATTTTAAAAGGATTAAAGCCACTTGGTGAAGACTATCTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTTGATGTTCATGAGAATAAAGGCAAAAGGAGCGGGGCTTATTCTTCGGGAACATATG
GCACCAACCCTTATATACTAATGAACTGGCAGGACAATGTGAACAACTTATTTACTCTGGCTCATGAATTTGGCCATTCG
GTTCATAGCTACTATACAAGAAAATATCAGCCATACCCTTATGGAAACTATTCAATTTTTGTTGCAGAGGTTGCCTCTAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTGAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGCCAGACCATGTTTGCAGAATTTGAACATCTTATTCATCAAAAGGCGCAA
AACAATGAAGCCTTGACTGCAGATTCATTGACTAAAGAATATTATGAACTTAATAAGAAGTATTTTGGGGATGAAGATAT
CGTAATTGATGAGGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATTCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGCAGCTCGGATTACCCAATTGAAGTGCTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAATGAAATGGAAAACTTGCTATCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486

Multiple sequence alignment