Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB2J53_RS01065 Genome accession   NZ_CP162020
Coordinates   186932..187885 (+) Length   317 a.a.
NCBI ID   WP_095245830.1    Uniprot ID   -
Organism   Cytobacillus firmus strain A4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181932..192885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2J53_RS01045 (AB2J53_01045) - 183463..183588 (+) 126 WP_258752018.1 hypothetical protein -
  AB2J53_RS01050 (AB2J53_01050) glmS 183685..185487 (+) 1803 WP_048008707.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  AB2J53_RS01055 (AB2J53_01055) - 185713..186124 (+) 412 Protein_168 DUF4275 family protein -
  AB2J53_RS01060 (AB2J53_01060) - 186269..186658 (+) 390 WP_048008708.1 ribbon-helix-helix protein, CopG family -
  AB2J53_RS01065 (AB2J53_01065) ceuB 186932..187885 (+) 954 WP_095245830.1 ABC transporter permease Machinery gene
  AB2J53_RS01070 (AB2J53_01070) - 187875..188828 (+) 954 WP_061793977.1 iron chelate uptake ABC transporter family permease subunit -
  AB2J53_RS01075 (AB2J53_01075) - 188825..189592 (+) 768 WP_368297758.1 ABC transporter ATP-binding protein -
  AB2J53_RS01080 (AB2J53_01080) - 189791..190816 (+) 1026 WP_368297759.1 siderophore ABC transporter substrate-binding protein -
  AB2J53_RS01085 (AB2J53_01085) - 190912..191550 (+) 639 WP_197212799.1 O-methyltransferase -
  AB2J53_RS01090 (AB2J53_01090) - 191604..192440 (-) 837 WP_197212797.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34689.75 Da        Isoelectric Point: 9.3878

>NTDB_id=1023599 AB2J53_RS01065 WP_095245830.1 186932..187885(+) (ceuB) [Cytobacillus firmus strain A4]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1023599 AB2J53_RS01065 WP_095245830.1 186932..187885(+) (ceuB) [Cytobacillus firmus strain A4]
ATGAGATTATGGATGTTAGGAATTGCAGCCATTGTTCTGTCTTTTATCTCGCTGTTTATCGGTGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATTT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGCAATAAGTTTGTATCACCAACAACAGCC
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTCACTTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCGATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCATCCTGGCTTATGGGAAGTTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTTAGTATTCC
CGCTATTATTCTGGCGTATCTATATGCGAATAAATTTACGGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTACTGAATATTGGCCTGGTCCTTGTTGCGGTTATCTCAACAACAGTAGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCATCCTTATGAAATTCCGGTTA
ATGTAACCGTGGCAGTAATAGGCAGTGCTATCTTCTTAACGATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527

Multiple sequence alignment