Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQN24_RS02965 Genome accession   NZ_LS483411
Coordinates   588709..589311 (+) Length   200 a.a.
NCBI ID   WP_021034375.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11426     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583709..594311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN24_RS02950 (NCTC11426_00585) - 584589..587183 (+) 2595 WP_110430713.1 penicillin-binding protein 1A -
  DQN24_RS02955 (NCTC11426_00586) - 587260..588105 (+) 846 WP_111695367.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DQN24_RS02960 (NCTC11426_00587) - 588247..588576 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DQN24_RS02965 (NCTC11426_00588) recR 588709..589311 (+) 603 WP_021034375.1 recombination mediator RecR Machinery gene
  DQN24_RS02970 (NCTC11426_00589) - 589327..591282 (+) 1956 WP_111695368.1 DNA topoisomerase III -
  DQN24_RS02975 (NCTC11426_00590) secG 591391..591732 (+) 342 WP_021034373.1 preprotein translocase subunit SecG -
  DQN24_RS08975 - 591935..592126 (+) 192 WP_172453994.1 integrase arm-type DNA-binding domain-containing protein -
  DQN24_RS09265 - 592184..592417 (+) 234 WP_416212903.1 phage integrase central domain-containing protein -
  DQN24_RS02990 (NCTC11426_00592) - 592592..592813 (-) 222 WP_021034372.1 sulfurtransferase TusA family protein -
  DQN24_RS02995 (NCTC11426_00593) - 592810..593328 (-) 519 WP_041175236.1 hemerythrin domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22121.22 Da        Isoelectric Point: 6.4840

>NTDB_id=1023536 DQN24_RS02965 WP_021034375.1 588709..589311(+) (recR) [Haemophilus influenzae strain NCTC11426]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSRIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGDLETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1023536 DQN24_RS02965 WP_021034375.1 588709..589311(+) (recR) [Haemophilus influenzae strain NCTC11426]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCGGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCTCTCACAGAAGCGATGTCTAGAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACCTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACTGGACAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTGTCTCCACTTGATGGCATTGGTCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGTTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACTGTGGAAGGCGATGCAACAGCAAACTACATCGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTGGGTGGGGACCTAGAAACTGTAGACGGCAC
AACGCTTACCCACTCATTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43