Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB3F25_RS08310 Genome accession   NZ_CP162010
Coordinates   1750971..1751924 (+) Length   317 a.a.
NCBI ID   WP_373603358.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1745971..1756924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS08280 (AB3F25_08275) rplB 1746261..1747082 (-) 822 WP_373603355.1 50S ribosomal protein L2 -
  AB3F25_RS08285 (AB3F25_08280) rplW 1747100..1747399 (-) 300 WP_005632756.1 50S ribosomal protein L23 -
  AB3F25_RS08290 (AB3F25_08285) rplD 1747396..1747998 (-) 603 WP_373603356.1 50S ribosomal protein L4 -
  AB3F25_RS08295 (AB3F25_08290) rplC 1748014..1748640 (-) 627 WP_314117121.1 50S ribosomal protein L3 -
  AB3F25_RS08300 (AB3F25_08295) rpsJ 1748657..1748968 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  AB3F25_RS08305 (AB3F25_08300) gorA 1749407..1750780 (-) 1374 WP_373603357.1 glutathione-disulfide reductase -
  AB3F25_RS08310 (AB3F25_08305) ceuB 1750971..1751924 (+) 954 WP_373603358.1 ABC transporter permease Machinery gene
  AB3F25_RS08315 (AB3F25_08310) - 1751917..1752876 (+) 960 WP_373603359.1 iron chelate uptake ABC transporter family permease subunit -
  AB3F25_RS08320 (AB3F25_08315) - 1752867..1753643 (+) 777 WP_373603360.1 ABC transporter ATP-binding protein -
  AB3F25_RS08325 (AB3F25_08320) - 1753643..1754557 (+) 915 WP_373603361.1 siderophore ABC transporter substrate-binding protein -
  AB3F25_RS08330 (AB3F25_08325) - 1754673..1754948 (+) 276 WP_373603362.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35109.28 Da        Isoelectric Point: 10.1926

>NTDB_id=1023498 AB3F25_RS08310 WP_373603358.1 1750971..1751924(+) (ceuB) [Aggregatibacter sp. HMT-949 strain W10649]
MYKRRYLVFLLFLFSFISLFLGVSTVNLRGLLNFDANQWQILLDSRLPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILLAILFFPGASMLLKTTVAIIVSFLGTLMFMTILSRLKFKDTIFVPLVGMMFGNIISAVTAFIAYQKDL
LQNLSGWLQGDFSLVMSGRYELLYFSLPLLIIAYLFANRFSIVGMGKDFAVNLGLNYNQVLYLGLIIVASVSSIVIVSVG
VIPFLGLIVPNIVTLYLGDNLKKILSHTALLGAVFVLFCDVLGRSLIYPYEISINAVLGVMGSGIFLYFLLKRYRHG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1023498 AB3F25_RS08310 WP_373603358.1 1750971..1751924(+) (ceuB) [Aggregatibacter sp. HMT-949 strain W10649]
ATGTACAAAAGACGGTATCTGGTTTTTCTATTATTTCTATTTTCTTTTATTTCCCTTTTTCTTGGCGTCAGTACTGTAAA
TTTACGAGGTCTATTGAATTTTGATGCCAATCAATGGCAAATCCTCCTAGATAGCCGCCTCCCTCGCTTAATTAGTATTT
TAATTGCCGGTGCATCGTTAAGCATTTGCGGTTTAGTGATGCAGCAATTGAGTCGTAATCGTTTCGTCTCCCCCACCACC
GCCGGAACCATGGACAGCGCTCGTTTAGGCATTCTTTTAGCTATTTTATTTTTTCCCGGCGCATCGATGTTATTAAAAAC
GACCGTTGCCATCATCGTGTCGTTTCTCGGCACGCTGATGTTTATGACAATTTTGTCGCGCTTGAAATTCAAAGATACCA
TTTTCGTACCGTTGGTCGGAATGATGTTCGGTAACATTATCAGTGCTGTCACTGCCTTCATCGCTTACCAAAAAGACTTA
CTACAAAATCTTTCCGGCTGGCTCCAAGGCGATTTTTCCTTAGTAATGTCCGGTCGCTATGAATTACTTTATTTCAGTTT
ACCGCTACTGATCATCGCCTATTTATTTGCCAATCGTTTTTCTATTGTTGGCATGGGGAAAGATTTTGCCGTCAATCTCG
GACTGAATTACAACCAAGTGCTCTATCTCGGTCTAATTATCGTCGCGAGCGTTTCTTCCATTGTGATCGTTTCCGTCGGC
GTGATTCCGTTTTTGGGTTTGATCGTGCCGAATATCGTGACCCTTTATTTAGGTGATAACCTAAAAAAAATCCTTTCCCA
TACCGCACTGCTCGGTGCCGTATTCGTACTTTTTTGCGACGTTTTAGGACGTAGCTTGATTTATCCTTACGAAATTTCCA
TCAATGCGGTGCTCGGCGTGATGGGTAGCGGTATTTTCTTGTATTTCTTACTGAAACGGTATCGTCATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment