Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3G36_RS03115 Genome accession   NZ_CP162007
Coordinates   744083..745444 (+) Length   453 a.a.
NCBI ID   WP_367755905.1    Uniprot ID   -
Organism   Flavobacterium sp. WC2430     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 739083..750444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G36_RS03095 (AB3G36_03095) - 740612..741418 (-) 807 WP_367755898.1 glycogen/starch synthase -
  AB3G36_RS03100 (AB3G36_03100) panC 741497..742375 (+) 879 WP_367755899.1 pantoate--beta-alanine ligase -
  AB3G36_RS03105 (AB3G36_03105) panD 742390..742740 (+) 351 WP_367755901.1 aspartate 1-decarboxylase -
  AB3G36_RS03110 (AB3G36_03110) - 742935..744083 (+) 1149 WP_367755903.1 alpha/beta hydrolase -
  AB3G36_RS03115 (AB3G36_03115) radA 744083..745444 (+) 1362 WP_367755905.1 DNA repair protein RadA Machinery gene
  AB3G36_RS03120 (AB3G36_03120) - 745578..747221 (+) 1644 WP_367755907.1 carboxylesterase/lipase family protein -
  AB3G36_RS03125 (AB3G36_03125) - 747420..747830 (+) 411 WP_367755909.1 hypothetical protein -
  AB3G36_RS03130 (AB3G36_03130) - 747905..748321 (+) 417 WP_367755911.1 hypothetical protein -
  AB3G36_RS03135 (AB3G36_03135) - 748467..750428 (+) 1962 WP_367755913.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49875.43 Da        Isoelectric Point: 6.3747

>NTDB_id=1023466 AB3G36_RS03115 WP_367755905.1 744083..745444(+) (radA) [Flavobacterium sp. WC2430]
MSKVKTTFFCQNCGAQYAKWQGQCNSCKEWNTIAEEIIQKQEKVAWKSEPTTKSKAPKPLKINEIDSAQEIRMDTTDAEL
NRVLGGGIVPGSMILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITTSSENCYILTETKTQNIFKQI
EAIEPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIASTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNTGIKIQLVAKIEDVASMLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1023466 AB3G36_RS03115 WP_367755905.1 744083..745444(+) (radA) [Flavobacterium sp. WC2430]
ATGTCAAAAGTTAAAACTACTTTTTTCTGCCAAAATTGTGGTGCACAATATGCCAAATGGCAAGGCCAATGTAATTCCTG
TAAAGAATGGAATACCATTGCAGAAGAAATTATACAAAAACAAGAAAAAGTAGCCTGGAAAAGCGAACCAACTACCAAAA
GTAAAGCTCCTAAACCATTAAAAATAAACGAAATTGATTCCGCTCAAGAGATCCGCATGGATACCACTGATGCTGAACTC
AACCGTGTTTTAGGAGGTGGAATTGTACCAGGCTCCATGATCCTCTTAGGTGGAGAACCTGGAATTGGAAAAAGTACGTT
ATTGCTTCAAATATCTTTAAAATTACCATATAAAACGCTATATGTTTCAGGAGAAGAAAGCCAGAAACAAATAAAAATGC
GTGCTGAAAGGATTACGACATCAAGTGAGAATTGCTATATTTTAACGGAAACAAAAACGCAGAATATCTTCAAACAAATT
GAAGCCATTGAACCCGAAATTGTAATTATCGATTCCATTCAAACCCTGCACACTGATTATATAGAATCCACAGCAGGAAG
TATATCTCAAATTCGGGAAACTACTGCTGAACTGATCAAGTTTGCCAAAGAAACCAATATTCCTGTTATTCTAATTGGTC
ATATTACCAAAGATGGAAATATAGCTGGACCAAAAATTCTGGAGCACATGGTAGATACTGTCCTGCAATTTGAAGGCGAC
CGAAATCATGTATACCGAATTTTGCGTTCGCTTAAAAATCGTTTTGGATCCACTGCCGAAATTGGAATTTATGAAATGCT
AGGAAGCGGATTACGAGAAGTTTCCAATCCATCCGAAATATTGATTTCTCATAAAGACGAAGAATTATCAGGAACTGCTA
TTGCCTCAACCCTCGAGGGAATGCGTCCGTTAATGATTGAAATACAATCCCTAGTAAGCACCGCCGTTTATGGAACTCCA
CAACGCAGTACCACCGGTTACAATGCCAAAAGATTAAATATGATTTTGGCTGTTTTAGAAAAAAGAGCTGGTTTTAGGCT
TGGCGCCAAAGATGTATTTCTCAACGTAACGGGAGGGATTTCAGTAGATGATCCTGCAATCGATTTGGCTGTAGTAGCCG
CAATTTTATCATCGAATGAAGATATTCCAGTAAATAAAGATTTTTGTTTTGCTGGCGAAGTAGGGCTTTCGGGAGAAATC
CGTCCTGTAAATCGTGTGGATCAACGCATTCAAGAAGCCGAAAAACTAGGTTTTTCAACGATTTTTGTATCCAAATACAA
TAAAATTGCCTTGAAAAATACGGGAATAAAAATCCAATTAGTAGCCAAAATTGAAGATGTGGCAAGCATGTTGTTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.123

100

0.494
  radA Streptococcus pneumoniae Rx1

50.82

94.26

0.479
  radA Streptococcus pneumoniae D39

50.82

94.26

0.479
  radA Streptococcus mitis NCTC 12261

50.82

94.26

0.479
  radA Streptococcus pneumoniae R6

50.82

94.26

0.479
  radA Streptococcus pneumoniae TIGR4

50.82

94.26

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

47.046

100

0.475

Multiple sequence alignment