Detailed information NTG1023456

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AB3G31_RS18565
• Genome accession: NZ_CP162006
• Coordinates: 3986259..3987311 (+)
• Length: 350 a.a.
• NCBI ID: WP_367847540.1
• Uniprot ID: -
• Organism: Rhodoferax sp. WC2427
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3981259..3992311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3G31_RS18540 (AB3G31_18540)	-	3981574..3982278 (+)	705	WP_367847537.1	alpha/beta fold hydrolase	-
AB3G31_RS18545 (AB3G31_18545)	coaD	3982346..3982840 (-)	495	WP_367847538.1	pantetheine-phosphate adenylyltransferase	-
AB3G31_RS18550 (AB3G31_18550)	rsmD	3982837..3983487 (-)	651	WP_367847539.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AB3G31_RS18555 (AB3G31_18555)	-	3983493..3984839 (-)	1347	WP_367850383.1	M16 family metallopeptidase	-
AB3G31_RS18560 (AB3G31_18560)	-	3984836..3986131 (-)	1296	WP_367850384.1	M16 family metallopeptidase	-
AB3G31_RS18565 (AB3G31_18565)	pilA	3986259..3987311 (+)	1053	WP_367847540.1	signal recognition particle-docking protein FtsY	Machinery gene
AB3G31_RS18570 (AB3G31_18570)	-	3987481..3988197 (+)	717	WP_367847541.1	PEP-CTERM sorting domain-containing protein	-
AB3G31_RS18575 (AB3G31_18575)	-	3988201..3988953 (-)	753	WP_367847542.1	hypothetical protein	-
AB3G31_RS18580 (AB3G31_18580)	-	3989045..3989725 (+)	681	WP_367847543.1	alpha/beta hydrolase	-
AB3G31_RS18585 (AB3G31_18585)	-	3989722..3990978 (+)	1257	WP_367847544.1	Hsp70 family protein	-
AB3G31_RS18590 (AB3G31_18590)	-	3991041..3991604 (-)	564	WP_367847545.1	hypothetical protein	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 36889.53 Da
• Isoelectric Point: 6.2955

>NTDB_id=1023456 AB3G31_RS18565 WP_367847540.1 3986259..3987311(+) (pilA) [Rhodoferax sp. WC2427]
MFSFFKKKPPAPEIAAPAPAVVAPASGWLRNPFAAKPAEVDVPKEPEAPAAPRAGWMDKLKNGLRKTGSGIATVFTGTQI
DDALYEELEEALLMADTGVKATQFLLADLKQRVKAAKATEPQAVKALLVESITTLLAPLEKALVIGQYTPTVIMVTGVNG
AGKTTSIGKLTRHLSASGASVLLAAADTFRAAAREQLGIWADRNTVEIVSQEGGDPASVAFDSVSAGKARGKDVVLVDTA
GRLPTQLHLMEELKKIRRVVNKADASAPHEVLLVIDGNTGQNAVSQVKIFDDAIQLTGLIVTKLDGTAKGGVLAAIAQER
PIPVYFIGVGEQLEDLETFNAREFAQALLA

Nucleotide

• Length: 1053 bp

>NTDB_id=1023456 AB3G31_RS18565 WP_367847540.1 3986259..3987311(+) (pilA) [Rhodoferax sp. WC2427]
ATGTTCAGCTTTTTCAAGAAAAAACCTCCTGCCCCCGAAATTGCGGCCCCTGCACCGGCAGTCGTTGCCCCCGCCTCGGG
CTGGCTGCGCAACCCGTTTGCGGCCAAGCCTGCCGAGGTTGACGTCCCCAAAGAGCCCGAAGCCCCCGCCGCCCCCCGCG
CGGGCTGGATGGACAAGCTCAAGAACGGCCTGCGCAAAACCGGCTCCGGCATCGCCACCGTGTTCACCGGCACGCAGATC
GACGACGCGCTGTACGAGGAACTGGAAGAAGCCCTGCTGATGGCCGACACCGGCGTCAAGGCCACGCAGTTTCTGCTGGC
CGACCTGAAGCAGCGCGTCAAAGCCGCCAAGGCCACCGAACCCCAGGCCGTGAAGGCGCTGCTGGTCGAGTCCATCACCA
CCCTGCTGGCGCCGCTGGAAAAAGCCCTGGTGATCGGCCAGTACACGCCCACGGTGATCATGGTGACCGGTGTGAACGGC
GCTGGAAAAACCACATCGATTGGCAAGCTCACGCGCCACCTGTCTGCATCAGGCGCTAGTGTTTTACTAGCAGCAGCGGA
CACCTTCCGCGCCGCCGCCCGCGAACAGCTGGGCATCTGGGCCGACCGCAATACGGTTGAAATCGTCAGCCAGGAAGGCG
GCGACCCGGCCTCGGTGGCGTTCGACTCGGTCAGCGCAGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTCGACACCGCG
GGCCGCCTGCCCACCCAGTTGCACCTGATGGAAGAGCTCAAGAAGATCCGCCGCGTGGTCAACAAGGCCGATGCCAGCGC
GCCCCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGGTCAGCCAGGTGAAGATTTTTGACGATGCCA
TCCAACTCACCGGCCTGATCGTCACCAAGCTGGACGGCACGGCCAAGGGCGGTGTGCTGGCGGCGATTGCCCAGGAGCGG
CCGATTCCGGTGTACTTCATCGGCGTGGGCGAGCAACTGGAAGATCTGGAAACCTTCAACGCACGGGAATTTGCCCAGGC
CCTGCTGGCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (150-349)

• SRP54-type protein, helical bundle domain (SRP54_N) (69-131)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	56.954	86.286	0.491