Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AB3G52_RS16685 Genome accession   NZ_CP161995
Coordinates   3463201..3463527 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain SIMBA035     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458201..3468527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G52_RS16665 (AB3G52_16665) - 3458302..3458931 (-) 630 WP_000219964.1 FHA domain-containing protein -
  AB3G52_RS16670 (AB3G52_16670) gspD 3458972..3461248 (-) 2277 WP_001196433.1 type II secretion system secretin GspD -
  AB3G52_RS16675 (AB3G52_16675) - 3461290..3462126 (-) 837 WP_000870034.1 type II secretion system protein N -
  AB3G52_RS16680 (AB3G52_16680) gspN 3462126..3462869 (-) 744 WP_000730343.1 type II secretion system protein N -
  AB3G52_RS16685 (AB3G52_16685) hns 3463201..3463527 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  AB3G52_RS16690 (AB3G52_16690) - 3463722..3464162 (-) 441 WP_000661569.1 thioesterase family protein -
  AB3G52_RS16695 (AB3G52_16695) - 3464170..3465363 (-) 1194 WP_000681780.1 membrane protein -
  AB3G52_RS16700 (AB3G52_16700) - 3465373..3466212 (-) 840 WP_001230210.1 hypothetical protein -
  AB3G52_RS16705 (AB3G52_16705) - 3466221..3466988 (-) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  AB3G52_RS16710 (AB3G52_16710) hemC 3466993..3467910 (-) 918 WP_031945328.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1023353 AB3G52_RS16685 WP_000801427.1 3463201..3463527(-) (hns) [Acinetobacter baumannii strain SIMBA035]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1023353 AB3G52_RS16685 WP_000801427.1 3463201..3463527(-) (hns) [Acinetobacter baumannii strain SIMBA035]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGCCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment