Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AB3G52_RS01585 Genome accession   NZ_CP161995
Coordinates   340259..340732 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA035     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335259..345732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G52_RS01560 (AB3G52_01560) - 335722..337827 (-) 2106 WP_020753492.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AB3G52_RS01565 (AB3G52_01565) - 337867..337997 (-) 131 Protein_299 hypothetical protein -
  AB3G52_RS01570 (AB3G52_01570) rpoZ 338036..338314 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB3G52_RS01575 (AB3G52_01575) gmk 338387..339016 (-) 630 WP_000015936.1 guanylate kinase -
  AB3G52_RS01580 (AB3G52_01580) ispH 339139..340089 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB3G52_RS01585 (AB3G52_01585) fimU 340259..340732 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB3G52_RS01590 (AB3G52_01590) pilV 340726..341286 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB3G52_RS01595 (AB3G52_01595) pilW 341287..342288 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  AB3G52_RS01600 (AB3G52_01600) pilX 342285..343103 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=1023321 AB3G52_RS01585 WP_001214068.1 340259..340732(+) (fimU) [Acinetobacter baumannii strain SIMBA035]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1023321 AB3G52_RS01585 WP_001214068.1 340259..340732(+) (fimU) [Acinetobacter baumannii strain SIMBA035]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment