Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AB3G50_RS16270 Genome accession   NZ_CP161989
Coordinates   3410988..3411461 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA028     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405988..3416461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G50_RS16255 (AB3G50_16255) pilX 3408617..3409435 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB3G50_RS16260 (AB3G50_16260) pilW 3409432..3410433 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  AB3G50_RS16265 (AB3G50_16265) pilV 3410434..3410994 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB3G50_RS16270 (AB3G50_16270) fimU 3410988..3411461 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB3G50_RS16275 (AB3G50_16275) ispH 3411631..3412581 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB3G50_RS16280 (AB3G50_16280) gmk 3412704..3413333 (+) 630 WP_000015936.1 guanylate kinase -
  AB3G50_RS16285 (AB3G50_16285) rpoZ 3413406..3413684 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB3G50_RS16290 (AB3G50_16290) - 3413723..3413853 (+) 131 Protein_3175 hypothetical protein -
  AB3G50_RS16295 (AB3G50_16295) - 3413893..3415998 (+) 2106 WP_020753492.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=1023258 AB3G50_RS16270 WP_001214068.1 3410988..3411461(-) (fimU) [Acinetobacter baumannii strain SIMBA028]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1023258 AB3G50_RS16270 WP_001214068.1 3410988..3411461(-) (fimU) [Acinetobacter baumannii strain SIMBA028]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment