Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DQN33_RS00835 Genome accession   NZ_LS483408
Coordinates   133960..134397 (+) Length   145 a.a.
NCBI ID   WP_052733618.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC4674     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128960..139397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN33_RS00815 (NCTC4674_00166) - 131337..131702 (+) 366 WP_041817508.1 DUF1033 family protein -
  DQN33_RS00820 (NCTC4674_00167) comGA/cglA 131775..132716 (+) 942 WP_012657673.1 competence type IV pilus ATPase ComGA Machinery gene
  DQN33_RS00825 (NCTC4674_00168) comGB 132834..133682 (+) 849 WP_331813062.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQN33_RS00830 (NCTC4674_00169) comGC/cglC 133683..134006 (+) 324 WP_046388917.1 competence type IV pilus major pilin ComGC Machinery gene
  DQN33_RS00835 (NCTC4674_00170) comGD 133960..134397 (+) 438 WP_052733618.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQN33_RS00840 (NCTC4674_00171) comGE 134369..134668 (+) 300 WP_052733619.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQN33_RS00845 (NCTC4674_00172) comGF/cglF 134628..135083 (+) 456 WP_046388919.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQN33_RS00850 (NCTC4674_00173) comGG 135061..135420 (+) 360 WP_111672967.1 competence type IV pilus minor pilin ComGG -
  DQN33_RS00855 (NCTC4674_00174) comGH 135465..136421 (+) 957 WP_111672968.1 class I SAM-dependent methyltransferase Machinery gene
  DQN33_RS00860 (NCTC4674_00175) - 136477..137667 (+) 1191 WP_012657681.1 acetate kinase -
  DQN33_RS00865 (NCTC4674_00176) - 137785..137988 (+) 204 WP_012657682.1 helix-turn-helix transcriptional regulator -
  DQN33_RS00870 - 137990..138442 (+) 453 WP_111672969.1 hypothetical protein -
  DQN33_RS00875 (NCTC4674_00178) - 138451..139104 (+) 654 WP_111672970.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16803.39 Da        Isoelectric Point: 9.8515

>NTDB_id=1023239 DQN33_RS00835 WP_052733618.1 133960..134397(+) (comGD) [Streptococcus uberis strain NCTC4674]
MTTLKNIQQNLAMYHSKAFTLAESLLCLAVTTFTILLLSSSLAGVYESVERELFFISFEHFYRHCQKMSVLKQEESALHF
TAHRIKYGQRELVIPDHIRLLNQGTIPFNKTGGSHSLAKIEWQTPREKMTYQLNLGSGNYQKRRH

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1023239 DQN33_RS00835 WP_052733618.1 133960..134397(+) (comGD) [Streptococcus uberis strain NCTC4674]
ATGACTACTTTAAAAAACATCCAACAGAATCTCGCAATGTATCATAGTAAAGCCTTCACCCTTGCTGAGAGCCTCCTGTG
TCTGGCAGTGACGACCTTTACCATTCTGTTGCTAAGTAGCTCTCTGGCGGGTGTTTACGAAAGTGTGGAAAGAGAGTTGT
TTTTCATTTCCTTTGAACATTTTTATCGCCATTGTCAAAAAATGAGTGTTTTAAAACAAGAAGAAAGTGCTTTGCACTTT
ACAGCACATCGTATCAAATATGGTCAGCGAGAATTAGTGATTCCAGATCATATTCGATTGTTAAATCAAGGGACTATCCC
TTTTAACAAAACAGGTGGTAGTCATTCCTTAGCAAAAATTGAGTGGCAAACACCAAGGGAGAAAATGACATATCAGCTAA
ACTTGGGGAGTGGGAATTATCAAAAACGAAGACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

45.038

90.345

0.407
  comGD Streptococcus mutans UA159

45.038

90.345

0.407

Multiple sequence alignment