Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM86_RS01420 Genome accession   NZ_LS483407
Coordinates   260074..261000 (+) Length   308 a.a.
NCBI ID   WP_002986004.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13744     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 255074..266000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM86_RS01410 (NCTC13744_00281) amiA 256537..258507 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  DQM86_RS01415 (NCTC13744_00282) amiC 258572..260074 (+) 1503 WP_002992227.1 ABC transporter permease Regulator
  DQM86_RS01420 (NCTC13744_00283) amiD 260074..261000 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQM86_RS01425 (NCTC13744_00284) amiE 261009..262079 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  DQM86_RS01430 (NCTC13744_00285) - 262072..262995 (+) 924 WP_109828742.1 ABC transporter ATP-binding protein -
  DQM86_RS09555 - 263033..263116 (-) 84 Protein_231 IS3 family transposase -
  DQM86_RS09320 - 263143..263394 (-) 252 WP_194088246.1 transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34862.81 Da        Isoelectric Point: 8.5670

>NTDB_id=1023152 DQM86_RS01420 WP_002986004.1 260074..261000(+) (amiD) [Streptococcus pyogenes strain NCTC13744]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1023152 DQM86_RS01420 WP_002986004.1 260074..261000(+) (amiD) [Streptococcus pyogenes strain NCTC13744]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTTTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731