Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB2M33_RS03205 Genome accession   NZ_CP161921
Coordinates   650384..652195 (+) Length   603 a.a.
NCBI ID   WP_049151214.1    Uniprot ID   -
Organism   Lactobacillus gasseri strain MG4644     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 645384..657195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M33_RS03180 - 645745..646527 (-) 783 WP_003656143.1 threonine/serine exporter family protein -
  AB2M33_RS03185 - 646550..648097 (-) 1548 WP_188885109.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB2M33_RS03190 - 648106..648498 (-) 393 WP_049151211.1 hypothetical protein -
  AB2M33_RS03195 - 648722..648991 (+) 270 WP_049151213.1 hypothetical protein -
  AB2M33_RS03200 - 649096..650220 (-) 1125 WP_003657007.1 LCP family protein -
  AB2M33_RS03205 pepF 650384..652195 (+) 1812 WP_049151214.1 oligoendopeptidase F Regulator
  AB2M33_RS03210 - 652259..653131 (-) 873 WP_188885110.1 Rpn family recombination-promoting nuclease/putative transposase -
  AB2M33_RS03215 - 653307..654746 (-) 1440 WP_367719552.1 hypothetical protein -
  AB2M33_RS03220 - 654931..656442 (-) 1512 WP_195185584.1 L-lactate permease -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68947.83 Da        Isoelectric Point: 4.7176

>NTDB_id=1023126 AB2M33_RS03205 WP_049151214.1 650384..652195(+) (pepF) [Lactobacillus gasseri strain MG4644]
MALPTRNEVSDELKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKELYEGITEILAVNRRLEKVYVYATMSS
DVDTSNTHYLGFVAKAQSLANQMSAAIAFVDPEILSIPAKTLTKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVSLRKKILGLKDLQMYDMYVPLTGKPVLSYNFNEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVESQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGNSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDEEREAYINFLKAGSSDY
PTELMKHAGVDMTKADYLRDAFDTFEKRLNEFEKIVDELNGEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1023126 AB2M33_RS03205 WP_049151214.1 650384..652195(+) (pepF) [Lactobacillus gasseri strain MG4644]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGAGCTTAAGTGGGACTTAAGTCGTGTTTTTAAAAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCGCAAGAAATCAAGAACTTAAGCAAATTCAAGGGAACACTTGCCAAATCTGGTAAAG
AGCTCTACGAAGGAATTACAGAAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCCACGATGTCAAGC
GACGTTGACACGAGCAATACTCATTACCTCGGCTTTGTTGCCAAAGCTCAAAGCTTAGCTAATCAAATGAGTGCTGCGAT
TGCTTTTGTCGATCCAGAAATTTTGTCTATTCCAGCAAAAACACTTACTAAGTTTATGCAAGATGAACCTCGCTTAGAAA
ACTATAGACATCGTCTTGAACAAATTACCCAAAAGCGTCCGCATACTCTACCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGACGCAATGGGAACGTCTGCTAACACTTTTAATGTCTTAACCAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGCTTATATTCGCTTTTAATTCAATCTCAAGACCGCAATGTTCGCAAAA
ACGCCTTTGACGTGATGTACGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGCGAAGTAAAGGCT
CACAATTTTAATGCTCGAGTACATAAATATAATTCAGCTAGAGAAGCTGCTTTAAGTGAAAATAGCGTCCCAACAGCTGT
TTACGATACCTTAATCAAGGAAGTAAATAGCCACCTCGACTTACTTCATCGCTACGTTTCATTAAGAAAGAAAATTTTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTGCCATTAACTGGGAAGCCCGTTCTTTCTTATAACTTTAACGAAGCA
AAAGAAGAAGCTAGAAAGGCTTTAGCACCATTAGGAGAGGACTATTTAAAACACGTTGATTACATTTTTAATAACCGCGT
AATTGACGTAGTTGAAAGTCAAAATAAAGTAACTGGTGCATATTCAGGTGGTGCCTACGATACTGATCCATACGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTTCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AATACTCAGCCTTACGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCCTCAACTACTAACGAAAATATTTTAAC
CGAGTATTTCTTAGACAAAATTACTGATCCAAAGACCCGTGCATTTGTCTTAAACCATTATCTTGACTCCTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCAGAATTTGAGCAATTTATCCATGAAACTGACGCAAATGGTCAGCCATTAACAGCT
GATGTCCTTGATGAATTTTATGGTAATTTGAATCAAAGATATTATGGTAATAGCGTTGAGCCAGGCGGAGAGATTGCTAA
AGAATGGGCGCGTATTCCCCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCAC
TTGCAAATAATGTTGTTCACGGCACTGACGAAGAACGTGAGGCTTATATTAATTTCTTAAAGGCTGGCTCTTCCGATTAC
CCAACAGAACTTATGAAACATGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
GCGTCTTAATGAATTTGAAAAAATTGTTGATGAATTAAACGGTGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.02

98.507

0.512

Multiple sequence alignment