Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AB2M34_RS17195 Genome accession   NZ_CP161903
Coordinates   3171108..3171902 (-) Length   264 a.a.
NCBI ID   WP_041332784.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3166108..3176902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS17160 (AB2M34_17160) spdL 3166509..3166841 (-) 333 WP_014479219.1 SdpC immunity protein SpdL -
  AB2M34_RS17165 (AB2M34_17165) yfhK 3166926..3167444 (-) 519 WP_003243363.1 SH3 domain-containing protein -
  AB2M34_RS17175 (AB2M34_17175) yfhJ 3168878..3169147 (-) 270 WP_003243789.1 YfhJ family protein -
  AB2M34_RS17180 (AB2M34_17180) sspK 3169272..3169424 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  AB2M34_RS17185 (AB2M34_17185) yfhI 3169456..3170649 (-) 1194 WP_072557044.1 MFS transporter -
  AB2M34_RS17190 (AB2M34_17190) yfhH 3170792..3171106 (-) 315 WP_003244592.1 YfhH family protein -
  AB2M34_RS17195 (AB2M34_17195) recX 3171108..3171902 (-) 795 WP_041332784.1 recombination regulator RecX Regulator
  AB2M34_RS17200 (AB2M34_17200) yfhF 3171991..3172902 (+) 912 WP_129134233.1 TIGR01777 family oxidoreductase -
  AB2M34_RS17205 (AB2M34_17205) yfhE 3172957..3173067 (+) 111 WP_003223230.1 YfhE family protein -
  AB2M34_RS17210 (AB2M34_17210) yfhD 3173134..3173325 (+) 192 WP_003233561.1 YfhD family protein -
  AB2M34_RS17215 (AB2M34_17215) yfhC 3173364..3173948 (-) 585 WP_121591550.1 nitroreductase -
  AB2M34_RS17220 (AB2M34_17220) yfhB 3174036..3174917 (-) 882 WP_121591549.1 PhzF family phenazine biosynthesis isomerase -
  AB2M34_RS17225 (AB2M34_17225) sxzA 3175032..3176063 (-) 1032 WP_043857890.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31057.24 Da        Isoelectric Point: 6.6686

>NTDB_id=1023098 AB2M34_RS17195 WP_041332784.1 3171108..3171902(-) (recX) [Bacillus subtilis strain DYJ24]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFASAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELRQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=1023098 AB2M34_RS17195 WP_041332784.1 3171108..3171902(-) (recX) [Bacillus subtilis strain DYJ24]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCTCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAGGATCAGACAAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAACTTTCGACGAAAGAACTCAGACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992

Multiple sequence alignment