Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB2M34_RS15985 Genome accession   NZ_CP161903
Coordinates   2955566..2956144 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain DYJ24     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2950566..2961144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS15950 (AB2M34_15950) lepB 2950573..2951079 (-) 507 WP_003233128.1 signal peptidase I -
  AB2M34_RS15955 (AB2M34_15955) yhjE 2951081..2951704 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  AB2M34_RS15960 (AB2M34_15960) - 2951856..2952227 (+) 372 WP_014476361.1 hypothetical protein -
  AB2M34_RS15965 (AB2M34_15965) yhjC 2952426..2952626 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AB2M34_RS15970 (AB2M34_15970) yhjB 2952623..2954092 (+) 1470 WP_014479374.1 sodium:solute symporter -
  AB2M34_RS15975 (AB2M34_15975) yhjA 2954136..2954405 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  AB2M34_RS15980 (AB2M34_15980) yhxD 2954622..2955521 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  AB2M34_RS15985 (AB2M34_15985) comK 2955566..2956144 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AB2M34_RS15990 (AB2M34_15990) yhzC 2956437..2956670 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AB2M34_RS15995 (AB2M34_15995) yhxC 2956698..2957555 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  AB2M34_RS16000 (AB2M34_16000) comW 2957659..2959187 (+) 1529 Protein_3160 FAD-dependent oxidoreductase -
  AB2M34_RS16005 (AB2M34_16005) hemAT 2959326..2960624 (+) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1023094 AB2M34_RS15985 WP_003245329.1 2955566..2956144(-) (comK) [Bacillus subtilis strain DYJ24]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1023094 AB2M34_RS15985 WP_003245329.1 2955566..2956144(-) (comK) [Bacillus subtilis strain DYJ24]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment