Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AB2M34_RS13975 Genome accession   NZ_CP161903
Coordinates   2593196..2593660 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain DYJ24     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2588196..2598660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS13955 (AB2M34_13955) fadH 2589384..2590148 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  AB2M34_RS13960 (AB2M34_13960) ppeE 2590291..2591151 (+) 861 WP_003232400.1 metallophosphoesterase -
  AB2M34_RS13965 (AB2M34_13965) ltdD 2591208..2591702 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  AB2M34_RS13970 (AB2M34_13970) ykuC 2591778..2593070 (+) 1293 WP_015252195.1 MFS transporter -
  AB2M34_RS13975 (AB2M34_13975) kre 2593196..2593660 (+) 465 WP_003232406.1 YkyB family protein Regulator
  AB2M34_RS13980 (AB2M34_13980) cheV 2593704..2594615 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  AB2M34_RS13985 (AB2M34_13985) - 2594819..2594980 (+) 162 WP_003245246.1 hypothetical protein -
  AB2M34_RS13990 (AB2M34_13990) dapX 2595182..2596363 (+) 1182 WP_082090376.1 aminotransferase A -
  AB2M34_RS13995 (AB2M34_13995) kinA 2596360..2598192 (-) 1833 WP_069964148.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=1023082 AB2M34_RS13975 WP_003232406.1 2593196..2593660(+) (kre) [Bacillus subtilis strain DYJ24]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1023082 AB2M34_RS13975 WP_003232406.1 2593196..2593660(+) (kre) [Bacillus subtilis strain DYJ24]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment