Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB2M34_RS13875 Genome accession   NZ_CP161903
Coordinates   2577236..2577811 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2572236..2582811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS13855 (AB2M34_13855) moeB 2573134..2574153 (-) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -
  AB2M34_RS13860 (AB2M34_13860) mobA 2574204..2574803 (-) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  AB2M34_RS13865 (AB2M34_13865) cse15 2574940..2575905 (+) 966 WP_014479669.1 spore protein Cse15 -
  AB2M34_RS13870 (AB2M34_13870) - 2576018..2577168 (+) 1151 WP_087614160.1 IS3 family transposase -
  AB2M34_RS13875 (AB2M34_13875) rok 2577236..2577811 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  AB2M34_RS13880 (AB2M34_13880) ykuV 2578277..2578723 (-) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  AB2M34_RS13885 (AB2M34_13885) ahpA 2578793..2579335 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  AB2M34_RS13890 (AB2M34_13890) mscT 2579572..2580375 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  AB2M34_RS13895 (AB2M34_13895) ykuS 2580412..2580657 (-) 246 WP_003232382.1 YkuS family protein -
  AB2M34_RS13900 (AB2M34_13900) dapI 2580719..2581843 (-) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  AB2M34_RS13905 (AB2M34_13905) dapD 2581913..2582623 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=1023081 AB2M34_RS13875 WP_003232378.1 2577236..2577811(-) (rok) [Bacillus subtilis strain DYJ24]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1023081 AB2M34_RS13875 WP_003232378.1 2577236..2577811(-) (rok) [Bacillus subtilis strain DYJ24]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment