Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB2M34_RS12915 Genome accession   NZ_CP161903
Coordinates   2385549..2386442 (-) Length   297 a.a.
NCBI ID   WP_129134280.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2380549..2391442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS12900 (AB2M34_12900) xerC 2380921..2381835 (-) 915 WP_014479777.1 tyrosine recombinase XerC -
  AB2M34_RS12905 (AB2M34_12905) trmFO 2381903..2383210 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB2M34_RS12910 (AB2M34_12910) topA 2383286..2385361 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  AB2M34_RS12915 (AB2M34_12915) dprA 2385549..2386442 (-) 894 WP_129134280.1 DNA-processing protein DprA Machinery gene
  AB2M34_RS12920 (AB2M34_12920) sucD 2386503..2387405 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  AB2M34_RS12925 (AB2M34_12925) sucC 2387434..2388591 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  AB2M34_RS12930 (AB2M34_12930) ylqH 2388764..2389045 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  AB2M34_RS12935 (AB2M34_12935) - 2389042..2390745 (-) 1704 WP_069837508.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32986.23 Da        Isoelectric Point: 9.8131

>NTDB_id=1023079 AB2M34_RS12915 WP_129134280.1 2385549..2386442(-) (dprA) [Bacillus subtilis strain DYJ24]
MDQAAACLTICRINQLLSPSHLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1023079 AB2M34_RS12915 WP_129134280.1 2385549..2386442(-) (dprA) [Bacillus subtilis strain DYJ24]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCATCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTGGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACGAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

41.697

91.246

0.38

Multiple sequence alignment