Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB2M34_RS10540 Genome accession   NZ_CP161903
Coordinates   1962400..1963020 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain DYJ24     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957400..1968020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS10520 (AB2M34_10520) dnaD 1957691..1958389 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AB2M34_RS10525 (AB2M34_10525) nth 1958408..1959067 (+) 660 WP_009967580.1 endonuclease III -
  AB2M34_RS10530 (AB2M34_10530) ypoC 1959064..1959558 (+) 495 WP_009967579.1 YpoC family protein -
  AB2M34_RS10535 (AB2M34_10535) ponA 1959634..1962378 (-) 2745 WP_046160510.1 transglycosylase domain-containing protein -
  AB2M34_RS10540 (AB2M34_10540) recU 1962400..1963020 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  AB2M34_RS10545 (AB2M34_10545) yppC 1963061..1964023 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  AB2M34_RS10550 (AB2M34_10550) sspM 1964048..1964152 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AB2M34_RS10555 (AB2M34_10555) yppD 1964351..1964596 (+) 246 WP_004398488.1 YppD family protein -
  AB2M34_RS10560 (AB2M34_10560) yppE 1964642..1965013 (+) 372 WP_003246080.1 YppE family protein -
  AB2M34_RS10565 (AB2M34_10565) yppF 1965052..1965240 (-) 189 WP_003230690.1 YppF family protein -
  AB2M34_RS10570 (AB2M34_10570) sppG 1965427..1965804 (+) 378 WP_004398696.1 YppG family protein -
  AB2M34_RS10575 (AB2M34_10575) ypqA 1965825..1966244 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  AB2M34_RS10580 (AB2M34_10580) ptsA 1966382..1966888 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=1023075 AB2M34_RS10540 WP_014480105.1 1962400..1963020(-) (recU) [Bacillus subtilis strain DYJ24]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1023075 AB2M34_RS10540 WP_014480105.1 1962400..1963020(-) (recU) [Bacillus subtilis strain DYJ24]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment