Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   DQN23_RS03295 Genome accession   NZ_LS483403
Coordinates   621838..625464 (+) Length   1208 a.a.
NCBI ID   WP_111712704.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 616838..630464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS03290 (NCTC13774_00676) rexB 618606..621848 (+) 3243 WP_111712703.1 ATP-dependent nuclease subunit B Machinery gene
  DQN23_RS03295 (NCTC13774_00677) rexA 621838..625464 (+) 3627 WP_111712704.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DQN23_RS03300 (NCTC13774_00678) - 625689..629411 (+) 3723 WP_111712705.1 hypothetical protein -

Sequence


Protein


Download         Length: 1208 a.a.        Molecular weight: 138400.60 Da        Isoelectric Point: 5.1009

>NTDB_id=1023073 DQN23_RS03295 WP_111712704.1 621838..625464(+) (rexA) [Streptococcus lutetiensis strain NCTC13774]
MIFKPFLTAEAISSLQQKEAQSSKAQKRTPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGITVDQLFISTFT
VKAAGELKERLEKKISQALQQATHNDLKTYLNEQLLALQTADIGTMDAFTQKLVNQYGYTLGISPTFRIMTDKSEQDLVK
NDVFADLFADYMTGQNQDIFRKLVRNFSGNRKDTTAFRGIVYKIYDFIQATDNPKKWLSEVFLKGARTYTDFSAIPDQEV
VDFLACMHETANQLQDVTDLEDYKQKTAKGTPTAAYKKHLNMIEHLHEWALHFETLYGRDGLGRLATDVADLIPSSPAVT
VAGVKYPIFKTLQGRLAGLKHLETIFKYQSESLPLLELLQAFMQDFSEQYLQAKIQENAFEFSDIAHFAIQILEENPDIR
ELYQDKYHEVMVDEYQDNNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR
SQSEVLDTTNSVFTHLMDESVGEILYDGMHQLVAGSPAQKEAHPENKTQVLIYDTDDGGELASSLEEEQINPNEVKLVAK
EIIRLHNEEGVAFEDITLLVSSRTRNDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLNDYALVALMRS
PMFSFNEDDLARLALQTSEDETRANLYQKLEHALANQGQHAELVTPVLREKLKDFMTCFSKWRDFAKWHSLYDLIWKIYN
ERFYYDYVGNLPRAEQRQANLYALALRANNFEKTGFKGLSRFIRMIDRVLESENDLADVEVALPKHAVNLMTIHKSKGLE
FKYVFILNIDKKFSIQDMMSPLILSRQNGAGIKYLADMREELDTDVFPTVKVSMDTLPYQLNKRELRLATLSEQMRLFYV
AMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAEREAFMTFQDWMLAIHEAYKDLPFKVEFVTDEDLTEEKIGQIEV
KSAIKPDDLSNNRQSENIAEALERLEAVAELNTKYQSAINLPSLRTPSQVKKLYELVMDTDGVDVMAKKDQVKPSFALPD
FSKKAKVEATAIGSAMHELMQRISLSQKVTLEDISKALTQVSAKDEVKARIHLENVLDFFENSALGQLIQQNTDKIYREA
PFAMLKEDPESKEKFVVRGIVDAYLILEDRLVLLDYKTDKYTNSEEIKDRYQGQMALYAEALSKSYHIDQVDKYLVLLGG
ECLEVVKL

Nucleotide


Download         Length: 3627 bp        

>NTDB_id=1023073 DQN23_RS03295 WP_111712704.1 621838..625464(+) (rexA) [Streptococcus lutetiensis strain NCTC13774]
ATGATCTTTAAACCATTTTTAACGGCTGAAGCGATTTCTTCTCTACAGCAAAAAGAGGCTCAGTCATCAAAAGCGCAAAA
ACGAACACCTGAACAAATTGAAGCCATTTATAGCTATGGCAACAATATTTTGGTATCAGCGTCGGCTGGTTCTGGGAAAA
CTTTCGTCATGGTTGAGCGCATTATTGATAAAATTTTGCGTGGGATTACTGTTGACCAGCTCTTTATTTCGACCTTTACA
GTTAAAGCAGCGGGAGAATTAAAAGAACGTCTTGAGAAAAAAATCAGCCAAGCTTTGCAACAAGCGACGCATAATGATTT
AAAAACCTATCTTAATGAGCAGCTGCTAGCTCTGCAGACTGCTGATATTGGAACCATGGATGCCTTTACGCAAAAGTTGG
TTAACCAATACGGCTACACATTAGGAATTTCACCGACTTTTCGCATTATGACGGATAAGAGCGAACAAGATCTTGTCAAG
AATGACGTTTTTGCAGATCTTTTTGCAGATTACATGACGGGGCAAAATCAAGACATTTTCCGCAAATTAGTTCGTAATTT
TTCTGGCAATCGTAAAGATACCACAGCTTTTAGAGGAATTGTTTACAAAATCTATGATTTCATTCAAGCAACGGATAATC
CTAAGAAATGGCTGTCTGAGGTTTTCTTGAAAGGTGCTAGAACCTATACTGATTTTTCCGCCATTCCCGACCAAGAAGTT
GTGGATTTTCTAGCTTGCATGCATGAGACAGCTAATCAATTACAAGATGTGACGGATTTAGAAGATTACAAGCAAAAAAC
AGCTAAGGGGACGCCTACAGCGGCTTATAAAAAGCATTTGAACATGATTGAGCATTTGCATGAGTGGGCTTTGCATTTTG
AGACGCTTTACGGTCGTGATGGACTTGGTCGTTTGGCGACAGATGTGGCTGACTTGATTCCATCTAGTCCAGCTGTGACA
GTTGCAGGGGTAAAATATCCAATTTTCAAGACTCTCCAAGGTCGTTTGGCTGGTCTGAAACACTTAGAAACTATCTTCAA
ATACCAATCGGAAAGTCTGCCTTTGTTAGAACTTTTACAAGCGTTTATGCAGGATTTCTCTGAACAATATTTGCAAGCTA
AAATTCAAGAAAATGCTTTTGAGTTTTCGGATATCGCTCATTTTGCTATCCAGATTTTGGAAGAAAATCCAGATATTCGT
GAGCTCTACCAAGATAAATACCACGAAGTCATGGTCGATGAGTACCAAGATAACAATCACACGCAAGAACGCATGCTTGA
ATTATTGTCAAATGGTCATAATCGATTCATGGTGGGAGATATCAAGCAATCTATCTATCGTTTTCGTCAGGCTGATCCGC
AGATTTTTAACCAAAAATTCAAGGATTTTCAAGAGCATCCAGAACATGGAAAATTAATTCTGCTAAAAGAAAACTTCCGT
AGTCAGTCAGAAGTCTTGGATACGACAAATAGTGTCTTTACGCATTTGATGGACGAGTCTGTTGGGGAAATTTTGTATGA
TGGCATGCACCAGTTAGTAGCAGGCAGTCCCGCACAAAAAGAAGCTCATCCAGAAAATAAAACACAAGTCCTTATTTACG
ATACTGATGATGGTGGTGAACTTGCAAGTAGTCTAGAAGAGGAGCAAATCAATCCAAACGAGGTTAAGCTGGTAGCTAAA
GAAATTATTCGCCTGCATAACGAAGAAGGTGTTGCCTTTGAAGACATCACGTTGCTAGTTTCATCACGTACGCGTAATGA
TGGTATTTTGCAGACTTTTGAACATTATGGTATTCCTTTGGTGACGGATGGCGGTGAGCAAAATTACCTAAAATCTGTTG
AAGTTATGGTGATGCTAGATACCCTTCGAGCTCTGGATAATCCGCTTAATGATTATGCTTTGGTAGCTCTGATGCGTTCA
CCAATGTTTTCTTTTAACGAAGATGATCTTGCTCGTCTTGCTCTTCAAACAAGCGAGGATGAGACCAGAGCCAATCTTTA
CCAAAAACTAGAACATGCTTTGGCTAATCAAGGTCAGCATGCAGAATTGGTCACACCAGTTTTACGTGAAAAATTAAAAG
ATTTTATGACTTGCTTTAGCAAGTGGCGTGATTTTGCCAAATGGCATTCGCTTTATGATTTGATTTGGAAGATTTACAAT
GAGCGCTTTTATTATGATTACGTGGGCAATCTCCCCCGTGCCGAGCAGCGCCAAGCCAATCTTTACGCCCTTGCACTTCG
TGCTAATAATTTTGAAAAGACTGGCTTTAAAGGCTTATCACGCTTTATTCGCATGATTGATCGCGTCTTAGAAAGTGAAA
ATGATTTGGCTGACGTTGAAGTGGCCCTTCCAAAACATGCTGTGAATTTGATGACTATCCATAAGAGTAAAGGACTTGAA
TTCAAGTATGTCTTTATTTTGAACATTGATAAGAAATTCAGTATTCAAGACATGATGTCACCCTTGATTTTGTCACGTCA
AAATGGAGCTGGTATCAAATATTTGGCTGACATGCGAGAAGAGTTAGATACGGATGTTTTTCCAACCGTTAAAGTTAGCA
TGGACACTTTGCCTTATCAGCTTAATAAACGTGAACTGCGCCTAGCAACCTTGTCTGAACAAATGCGTTTGTTCTATGTT
GCCATGACCCGTGCTGAGAAGAAATTGTATTTAGTCGGAAAAGCAAGTTCTGAGAAATTGGTTGATAAATACAGCGGTAA
GTCAGAAAATAATCATCTTCCAGTTGCAGAACGTGAAGCTTTCATGACTTTCCAAGATTGGATGTTGGCCATTCATGAAG
CTTATAAGGACTTACCATTTAAGGTTGAATTTGTCACAGATGAAGATCTGACAGAAGAGAAAATCGGTCAGATTGAAGTC
AAATCAGCTATTAAACCTGATGATTTGTCAAATAACCGCCAGTCAGAAAATATTGCAGAAGCTTTGGAGAGACTTGAGGC
AGTTGCAGAGTTGAATACCAAATATCAATCAGCCATTAACCTGCCAAGCTTAAGAACACCTAGTCAGGTTAAGAAACTTT
ATGAGCTTGTTATGGATACTGATGGTGTTGATGTGATGGCTAAGAAGGACCAAGTAAAACCAAGCTTTGCCTTACCTGAT
TTTTCGAAAAAAGCCAAGGTTGAAGCAACAGCGATTGGTTCTGCCATGCACGAGCTCATGCAGCGCATTTCCTTGTCTCA
AAAAGTGACACTAGAGGATATTTCAAAAGCTCTAACACAAGTGTCTGCTAAAGATGAAGTTAAAGCGCGCATTCATCTAG
AAAATGTTTTGGATTTCTTTGAAAATTCAGCTCTTGGACAATTGATTCAGCAAAATACTGACAAAATCTACCGCGAAGCT
CCATTTGCTATGCTAAAAGAAGACCCTGAGAGCAAAGAAAAATTTGTTGTTCGTGGGATTGTCGATGCTTATCTTATTTT
AGAGGATCGTTTGGTTCTTTTAGATTACAAGACTGATAAATACACAAACAGCGAGGAAATCAAAGACCGATACCAAGGTC
AAATGGCACTTTATGCCGAAGCACTCAGCAAGTCATATCATATTGATCAAGTTGACAAATACCTTGTTTTACTTGGTGGA
GAGTGTCTGGAAGTAGTTAAACTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

53.079

100

0.542


Multiple sequence alignment