Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB2M34_RS07435 Genome accession   NZ_CP161903
Coordinates   1427293..1428039 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1422293..1433039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS07420 (AB2M34_07420) - 1422520..1422711 (-) 192 WP_003222590.1 hypothetical protein -
  AB2M34_RS07425 (AB2M34_07425) valS 1423159..1425801 (+) 2643 WP_017697542.1 valine--tRNA ligase -
  AB2M34_RS07430 (AB2M34_07430) folC 1425861..1427153 (+) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB2M34_RS07435 (AB2M34_07435) comC 1427293..1428039 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  AB2M34_RS07440 (AB2M34_07440) spoIIB 1428173..1429171 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  AB2M34_RS07445 (AB2M34_07445) maf 1429324..1429893 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  AB2M34_RS07450 (AB2M34_07450) radC 1429930..1430331 (+) 402 Protein_1456 DNA repair protein RadC -
  AB2M34_RS07455 (AB2M34_07455) - 1430350..1431768 (-) 1419 WP_250620438.1 recombinase family protein -
  AB2M34_RS07460 (AB2M34_07460) - 1431817..1432263 (-) 447 WP_367746106.1 ImmA/IrrE family metallo-endopeptidase -
  AB2M34_RS07465 (AB2M34_07465) - 1432277..1432711 (-) 435 WP_163116891.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=1023055 AB2M34_RS07435 WP_072592551.1 1427293..1428039(+) (comC) [Bacillus subtilis strain DYJ24]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1023055 AB2M34_RS07435 WP_072592551.1 1427293..1428039(+) (comC) [Bacillus subtilis strain DYJ24]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment